pybiolib 1.2.517__tar.gz → 1.2.520__tar.gz

{pybiolib-1.2.517 → pybiolib-1.2.520}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.517
+Version: 1.2.520
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.517 → pybiolib-1.2.520}/biolib/jobs/job.py

@@ -230,7 +230,35 @@ class Job:
         except Exception as error:
             raise BioLibError(f'Failed to rename job {self._uuid} due to: {error}') from error
 
-    def recompute(self, app_uri: Optional[str] = None, machine: Optional[str] = None, blocking: bool = True) -> 'Job':
+    def recompute(
+        self,
+        app_uri: Optional[str] = None,
+        machine: Optional[str] = None,
+        blocking: bool = True,
+        arguments: Optional[List[str]] = None,
+    ) -> 'Job':
+        """Recompute the job with the same input files but potentially different arguments.
+
+        Args:
+            app_uri (Optional[str], optional): The URI of the app to use for recomputation.
+                If None, uses the original app URI. Defaults to None.
+            machine (Optional[str], optional): The machine to run the job on.
+                If None, uses the original requested machine. Defaults to None.
+            blocking (bool, optional): Whether to block until the job completes.
+                If True, streams logs until completion. Defaults to True.
+            arguments (Optional[List[str]], optional): New arguments to use for the job.
+                If None, uses the original arguments. Defaults to None.
+
+        Returns:
+            Job: A new Job instance for the recomputed job.
+
+        Example::
+            >>> job = biolib.get_job("job_id")
+            >>> # Recompute with the same arguments
+            >>> new_job = job.recompute()
+            >>> # Recompute with different arguments
+            >>> new_job = job.recompute(arguments=["--new-arg", "value"])
+        """
         app_response = BiolibAppApi.get_by_uri(uri=app_uri or self._job_dict['app_uri'])
 
         job_storage_input = RemoteJobStorageEndpoint(
@@ -241,6 +269,16 @@ class Job:
         http_response = HttpClient.request(url=job_storage_input.get_remote_url())
         module_input_serialized = http_response.content
 
+        # If arguments are provided, deserialize the module input, update the arguments, and serialize it again
+        if arguments is not None:
+            module_input = ModuleInput(module_input_serialized)
+            module_input_dict = module_input.deserialize()
+
+            # Create a new ModuleInput with updated arguments
+            module_input_serialized = ModuleInput().serialize(
+                stdin=module_input_dict['stdin'], arguments=arguments, files=module_input_dict['files']
+            )
+
         original_requested_machine = (
             self._job_dict['requested_machine'] if self._job_dict['requested_machine'] else None
         )

{pybiolib-1.2.517 → pybiolib-1.2.520}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.517"
+version = "1.2.520"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"