pybiolib 1.2.435__tar.gz → 1.2.445__tar.gz

{pybiolib-1.2.435 → pybiolib-1.2.445}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.435
+Version: 1.2.445
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.435 → pybiolib-1.2.445}/biolib/jobs/job.py

@@ -19,7 +19,7 @@ from biolib.biolib_errors import BioLibError, CloudJobFinishedError
 from biolib.biolib_logging import logger, logger_no_user_data
 from biolib.compute_node.job_worker.job_storage import JobStorage
 from biolib.compute_node.utils import SystemExceptionCodeMap, SystemExceptionCodes
-from biolib.jobs.job_result import JobResult
+from biolib.jobs.job_result import JobResult, PathFilter
 from biolib.jobs.types import CloudJobDict, CloudJobStartedDict, JobDict
 from biolib.tables import BioLibTable
 from biolib.typing_utils import Dict, List, Optional, Union, cast
@@ -102,11 +102,14 @@ class Job:
             state=self._job_dict['state'],
         )
 
-    def list_output_files(self, *args, **kwargs) -> List[LazyLoadedFile]:
-        return self.result.list_output_files(*args, **kwargs)
+    def list_output_files(
+        self,
+        path_filter: Optional[PathFilter] = None,
+    ) -> List[LazyLoadedFile]:
+        return self.result.list_output_files(path_filter=path_filter)
 
-    def get_output_file(self, *args, **kwargs) -> LazyLoadedFile:
-        return self.result.get_output_file(*args, **kwargs)
+    def get_output_file(self, filename: str) -> LazyLoadedFile:
+        return self.result.get_output_file(filename=filename)
 
     def load_file_as_numpy(self, *args, **kwargs):
         try:
@@ -165,8 +168,17 @@ class Job:
 
             logger.info(f'  - {destination_file_path}')
 
-    def save_files(self, *args, **kwargs) -> None:
-        self.result.save_files(*args, **kwargs)
+    def save_files(
+        self,
+        output_dir: str,
+        path_filter: Optional[PathFilter] = None,
+        skip_file_if_exists: Optional[bool] = None,
+    ) -> None:
+        self.result.save_files(
+            output_dir=output_dir,
+            path_filter=path_filter,
+            skip_file_if_exists=skip_file_if_exists,
+        )
 
     def get_status(self) -> str:
         self._refetch_job_dict()
@@ -178,9 +190,10 @@ class Job:
             time.sleep(2)
         logger.info(f'Job {self.id} has finished.')
 
-    def get_shareable_link(self) -> str:
+    def get_shareable_link(self, embed_view: Optional[bool] = None) -> str:
         api_client = BiolibApiClient.get()
-        shareable_link = f'{api_client.base_url}/results/{self.id}/?token={self._auth_token}'
+        prefix = '/embed' if embed_view else ''
+        shareable_link = f'{api_client.base_url}{prefix}/results/{self.id}/?token={self._auth_token}'
         return shareable_link
 
     def open_browser(self) -> None:

{pybiolib-1.2.435 → pybiolib-1.2.445}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.435"
+version = "1.2.445"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"