pybiolib 1.2.366__tar.gz → 1.2.408__tar.gz

{pybiolib-1.2.366 → pybiolib-1.2.408}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.366
+Version: 1.2.408
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.366 → pybiolib-1.2.408}/biolib/app/app.py

@@ -11,7 +11,7 @@ from biolib.biolib_api_client.app_types import App, AppVersion
 from biolib.biolib_api_client.biolib_app_api import BiolibAppApi
 from biolib.biolib_api_client.biolib_job_api import BiolibJobApi
 from biolib.biolib_binary_format import ModuleInput
-from biolib.biolib_errors import BioLibError
+from biolib.biolib_errors import BioLibError, JobResultNonZeroExitCodeError
 from biolib.biolib_logging import logger
 from biolib.compute_node.job_worker.job_worker import JobWorker
 from biolib.experiments.experiment import Experiment
@@ -59,10 +59,15 @@ class BioLibApp:
         machine_count: Optional[int] = None,
         experiment: Optional[str] = None,
         temporary_client_secrets: Optional[Dict[str, str]] = None,
+        check: bool = False,
+        stream_logs: bool = False,
     ) -> Job:
         if experiment_id and experiment:
             raise ValueError('Only one of experiment_id and experiment can be specified')
 
+        if check and not blocking:
+            raise ValueError('The argument "check" cannot be True when blocking is False')
+
         if not experiment_id:
             experiment_instance = Experiment(experiment) if experiment else Experiment.get_experiment_in_context()
             experiment_id = experiment_instance.uuid if experiment_instance else None
@@ -100,10 +105,15 @@ class BioLibApp:
                 utils.STREAM_STDOUT = True
 
             enable_print = bool(
-                utils.STREAM_STDOUT
+                (utils.STREAM_STDOUT or stream_logs)
                 and (self._app_version.get('main_output_file') or self._app_version.get('stdout_render_type') == 'text')
             )
-            job._stream_logs(enable_print=enable_print)  # pylint: disable=protected-access
+            job._stream_logs(enable_print=enable_print) # pylint: disable=protected-access
+
+            if check:
+                exit_code = job.get_exit_code()
+                if exit_code != 0:
+                    raise JobResultNonZeroExitCodeError(exit_code)
 
         return job
 

{pybiolib-1.2.366 → pybiolib-1.2.408}/biolib/biolib_errors.py

@@ -43,3 +43,12 @@ class JobResultNotFound(JobResultError):
 
 class JobResultPermissionError(JobResultError):
     pass
+
+
+class JobResultNonZeroExitCodeError(JobResultError):
+    """Raised when an app returns a non-zero exit code and check=True."""
+    def __init__(self, exit_code: int, message: Optional[str] = None):
+        self.exit_code = exit_code
+        super().__init__(
+            message or f'App returned non-zero exit code: {exit_code}'
+        )

{pybiolib-1.2.366 → pybiolib-1.2.408}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.366"
+version = "1.2.408"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"