pybiolib 1.2.249__tar.gz → 1.2.252__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (124) hide show
  1. {pybiolib-1.2.249 → pybiolib-1.2.252}/PKG-INFO +1 -1
  2. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_logging.py +3 -4
  3. {pybiolib-1.2.249 → pybiolib-1.2.252}/pyproject.toml +1 -1
  4. {pybiolib-1.2.249 → pybiolib-1.2.252}/LICENSE +0 -0
  5. {pybiolib-1.2.249 → pybiolib-1.2.252}/PYPI_README.md +0 -0
  6. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/__init__.py +0 -0
  7. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_data_record/data_record.py +0 -0
  8. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/__init__.py +0 -0
  9. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/data_record/__init__.py +0 -0
  10. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/data_record/data_record.py +0 -0
  11. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/data_record/push_data.py +0 -0
  12. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
  13. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/file_utils.py +0 -0
  14. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/fuse_mount/__init__.py +0 -0
  15. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
  16. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/http_client.py +0 -0
  17. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/lfs/__init__.py +0 -0
  18. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/lfs/cache.py +0 -0
  19. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/libs/__init__.py +0 -0
  20. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/libs/fusepy/__init__.py +0 -0
  21. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/push_application.py +0 -0
  22. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/runtime.py +0 -0
  23. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/__init__.py +0 -0
  24. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/app.py +0 -0
  25. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/data_record.py +0 -0
  26. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/experiment.py +0 -0
  27. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/file_node.py +0 -0
  28. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/resource.py +0 -0
  29. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/resource_version.py +0 -0
  30. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/types/typing.py +0 -0
  31. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/utils/__init__.py +0 -0
  32. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_internal/utils/multinode.py +0 -0
  33. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/_runtime/runtime.py +0 -0
  34. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/api/__init__.py +0 -0
  35. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/api/client.py +0 -0
  36. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/app/__init__.py +0 -0
  37. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/app/app.py +0 -0
  38. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/app/search_apps.py +0 -0
  39. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/__init__.py +0 -0
  40. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/api_client.py +0 -0
  41. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/app_types.py +0 -0
  42. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/auth.py +0 -0
  43. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  44. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  45. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/common_types.py +0 -0
  46. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/job_types.py +0 -0
  47. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/lfs_types.py +0 -0
  48. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_api_client/user_state.py +0 -0
  49. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/__init__.py +0 -0
  50. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  51. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/file_in_container.py +0 -0
  52. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/module_input.py +0 -0
  53. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  54. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  55. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  56. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/saved_job.py +0 -0
  57. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  58. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/system_exception.py +0 -0
  59. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/system_status_update.py +0 -0
  60. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_binary_format/utils.py +0 -0
  61. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_docker_client/__init__.py +0 -0
  62. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_download_container.py +0 -0
  63. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/biolib_errors.py +0 -0
  64. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/__init__.py +0 -0
  65. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/auth.py +0 -0
  66. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/data_record.py +0 -0
  67. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/download_container.py +0 -0
  68. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/init.py +0 -0
  69. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/lfs.py +0 -0
  70. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/push.py +0 -0
  71. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/run.py +0 -0
  72. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/runtime.py +0 -0
  73. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/cli/start.py +0 -0
  74. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/.gitignore +0 -0
  75. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/__init__.py +0 -0
  76. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  77. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  78. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/__init__.py +0 -0
  79. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/cache_state.py +0 -0
  80. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/cache_types.py +0 -0
  81. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  82. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  83. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  84. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  85. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  86. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/executors/types.py +0 -0
  87. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  88. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  89. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/job_storage.py +0 -0
  90. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/job_worker.py +0 -0
  91. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  92. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/mappings.py +0 -0
  93. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  94. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/job_worker/utils.py +0 -0
  95. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/remote_host_proxy.py +0 -0
  96. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/socker_listener_thread.py +0 -0
  97. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/socket_sender_thread.py +0 -0
  98. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/utils.py +0 -0
  99. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/webserver/__init__.py +0 -0
  100. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  101. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/webserver/webserver.py +0 -0
  102. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/webserver/webserver_types.py +0 -0
  103. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  104. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/compute_node/webserver/worker_thread.py +0 -0
  105. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/experiments/__init__.py +0 -0
  106. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/experiments/experiment.py +0 -0
  107. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/jobs/__init__.py +0 -0
  108. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/jobs/job.py +0 -0
  109. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/jobs/job_result.py +0 -0
  110. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/jobs/types.py +0 -0
  111. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/runtime/__init__.py +0 -0
  112. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/sdk/__init__.py +0 -0
  113. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/tables.py +0 -0
  114. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/templates/__init__.py +0 -0
  115. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/templates/example_app.py +0 -0
  116. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/typing_utils.py +0 -0
  117. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/user/__init__.py +0 -0
  118. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/user/sign_in.py +0 -0
  119. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/utils/__init__.py +0 -0
  120. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/utils/app_uri.py +0 -0
  121. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/utils/cache_state.py +0 -0
  122. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/utils/multipart_uploader.py +0 -0
  123. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/utils/seq_util.py +0 -0
  124. {pybiolib-1.2.249 → pybiolib-1.2.252}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: pybiolib
3
- Version: 1.2.249
3
+ Version: 1.2.252
4
4
  Summary: BioLib Python Client
5
5
  Home-page: https://github.com/biolib
6
6
  License: MIT
@@ -1,6 +1,6 @@
1
1
  import logging
2
- import sys
3
2
  import os
3
+ import sys
4
4
 
5
5
  _DEFAULT_LOGGER_FORMAT = '%(asctime)s | %(levelname)s : %(message)s'
6
6
 
@@ -14,7 +14,6 @@ logging.addLevelName(TRACE, 'TRACE')
14
14
 
15
15
  # note: Logger classes should never be instantiated directly
16
16
  class _BioLibLogger(logging.Logger):
17
-
18
17
  def __init__(self, name: str, level=logging.INFO):
19
18
  super(_BioLibLogger, self).__init__(name=name, level=level)
20
19
 
@@ -44,7 +43,7 @@ class _BioLibLogger(logging.Logger):
44
43
 
45
44
  def _get_biolib_logger_instance(name: str) -> _BioLibLogger:
46
45
  # for thread safety use the global lock of logging
47
- logging._acquireLock() # type: ignore # pylint: disable=protected-access
46
+ logging._lock.acquire() # type: ignore # pylint: disable=protected-access
48
47
 
49
48
  original_logger_class = logging.getLoggerClass()
50
49
  try:
@@ -55,7 +54,7 @@ def _get_biolib_logger_instance(name: str) -> _BioLibLogger:
55
54
  logging.setLoggerClass(original_logger_class)
56
55
  return biolib_logger # type: ignore
57
56
  finally:
58
- logging._releaseLock() # type: ignore # pylint: disable=protected-access
57
+ logging._lock.release() # type: ignore # pylint: disable=protected-access
59
58
 
60
59
 
61
60
  def _get_no_user_data_logger() -> _BioLibLogger:
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "pybiolib"
3
- version = "1.2.249"
3
+ version = "1.2.252"
4
4
  description = "BioLib Python Client"
5
5
  readme = "PYPI_README.md"
6
6
  license = "MIT"
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes