pybiolib 1.2.209__tar.gz → 1.2.216__tar.gz

{pybiolib-1.2.209 → pybiolib-1.2.216}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.209
+Version: 1.2.216
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.209 → pybiolib-1.2.216}/biolib/compute_node/job_worker/executors/docker_executor.py

@@ -41,9 +41,6 @@ class DockerExecutor:
         self._is_cleaning_up = False
 
         self._absolute_image_uri = f"{utils.BIOLIB_SITE_HOSTNAME}/{self._options['module']['image_uri']}"
-        if self._options['job'].get('federated_job_uuid'):
-            self._absolute_image_uri = self._options['module']['absolute_image_uri']
-
         self._send_system_exception = options['send_system_exception']
         self._send_stdout_and_stderr = options['send_stdout_and_stderr']
         self._random_docker_id = compute_node_utils.random_string(15)
@@ -125,7 +122,7 @@ class DockerExecutor:
                 time.sleep(5 * retry_count)
             try:
                 start_time = time.time()
-                if utils.IS_RUNNING_IN_CLOUD and not self._options['job'].get('federated_job_uuid'):
+                if utils.IS_RUNNING_IN_CLOUD:
                     DockerImageCache().get(
                         image_uri=self._absolute_image_uri,
                         estimated_image_size_bytes=estimated_image_size_bytes,
@@ -136,7 +133,7 @@ class DockerExecutor:
                     try:
                         docker_client.images.get(self._absolute_image_uri)
                     except ImageNotFound:
-                        job_uuid = self._options['job'].get('federated_job_uuid') or self._options['job']['public_id']
+                        job_uuid = self._options['job']['public_id']
                         docker_client.images.pull(
                             self._absolute_image_uri,
                             auth_config={'username': 'biolib', 'password': f',{job_uuid}'},

{pybiolib-1.2.209 → pybiolib-1.2.216}/biolib/compute_node/webserver/webserver.py

@@ -19,7 +19,11 @@ from biolib.typing_utils import Optional
 
 app = Flask(__name__)
 
-biolib_tmp_dir = tempfile.TemporaryDirectory()
+if utils.IS_RUNNING_IN_CLOUD:
+    _BIOLIB_TMP_DIR = '/biolib/tmp'
+    os.makedirs(_BIOLIB_TMP_DIR, exist_ok=True)
+else:
+    _BIOLIB_TMP_DIR = tempfile.TemporaryDirectory().name
 
 
 @app.route('/hello/')
@@ -41,7 +45,7 @@ def save_job():
         return jsonify({'job': 'Invalid job'}), 400
 
     job_id = saved_job['job']['public_id']
-    job_temporary_dir = os.path.join(biolib_tmp_dir.name, job_id)
+    job_temporary_dir = os.path.join(_BIOLIB_TMP_DIR, job_id)
     os.makedirs(job_temporary_dir)
     saved_job['BASE_URL'] = BiolibApiClient.get().base_url
     saved_job['job_temporary_dir'] = job_temporary_dir

{pybiolib-1.2.209 → pybiolib-1.2.216}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.209"
+version = "1.2.216"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"