pybiolib 1.2.197__tar.gz → 1.2.209__tar.gz

{pybiolib-1.2.197 → pybiolib-1.2.209}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.197
+Version: 1.2.209
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.197 → pybiolib-1.2.209}/biolib/compute_node/job_worker/executors/docker_executor.py

@@ -501,6 +501,10 @@ class DockerExecutor:
                 stdout=stdout,
             )
         except Exception as exception:
+            logger.error("Hit Error 23")
+            logger.exception("Error")
+            logger.error(str(exception))
+            time.sleep(3)
             raise ComputeProcessException(
                 exception,
                 SystemExceptionCodes.FAILED_TO_SERIALIZE_AND_SEND_MODULE_OUTPUT.value,

{pybiolib-1.2.197 → pybiolib-1.2.209}/biolib/jobs/job.py

@@ -32,6 +32,7 @@ class Job:
     table_columns_to_row_map = OrderedDict(
         {
             'ID': {'key': 'uuid', 'params': {'width': 36}},
+            'Name': {'key': 'main_result.name', 'params': {}},
             'Application': {'key': 'app_uri', 'params': {}},
             'Status': {'key': 'state', 'params': {}},
             'Started At': {'key': 'started_at', 'params': {}},

{pybiolib-1.2.197 → pybiolib-1.2.209}/biolib/tables.py

@@ -17,7 +17,16 @@ class BioLibTable:
         columns = [Column(header=header, **meta['params']) for header, meta in self.columns_to_row_map.items()]
         table = Table(*columns, title=self.title)
         for row in self.rows:
-            table.add_row(*[str(row[column['key']]) for column in self.columns_to_row_map.values()])
+            row_values: List[str] = []
+            for column in self.columns_to_row_map.values():
+                keys = column['key'].split('.')
+                value = row[keys[0]]
+                for key in keys[1:]:
+                    if not value or key not in value:
+                        continue
+                    value = value[key]
+                row_values.append(str(value))
+            table.add_row(*row_values)
         return table
 
     def print_table(self):

{pybiolib-1.2.197 → pybiolib-1.2.209}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.197"
+version = "1.2.209"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"