pybiolib 1.2.174__tar.gz → 1.2.181__tar.gz

{pybiolib-1.2.174 → pybiolib-1.2.181}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.174
+Version: 1.2.181
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.174 → pybiolib-1.2.181}/biolib/cli/run.py

@@ -4,18 +4,28 @@ import click
 
 from biolib import biolib_errors, utils
 from biolib.app import BioLibApp
-from biolib.typing_utils import Tuple
+from biolib.experiments.experiment import Experiment
+from biolib.typing_utils import Optional, Tuple
 
 
 @click.command(
     context_settings=dict(ignore_unknown_options=True, allow_interspersed_args=False),
-    help='Run an application on BioLib',
+    help='Run an application on BioLib.',
 )
-@click.option('--local', is_flag=True, required=False, help='Run the application locally')
-@click.option('--non-blocking', is_flag=True, required=False, help='Run the application non blocking')
+@click.option('--experiment', type=str, required=False, help='Experiment name or URI to add the run to.')
+@click.option('--local', is_flag=True, required=False, help='Run the application locally.')
+@click.option('--non-blocking', is_flag=True, required=False, help='Run the application non blocking.')
 @click.argument('uri', required=True)
 @click.argument('args', nargs=-1, type=click.UNPROCESSED)
-def run(local: bool, non_blocking: bool, uri: str, args: Tuple[str]) -> None:
+def run(experiment: Optional[str], local: bool, non_blocking: bool, uri: str, args: Tuple[str]) -> None:
+    if experiment:
+        with Experiment(uri=experiment):
+            _run(local=local, non_blocking=non_blocking, uri=uri, args=args)
+    else:
+        _run(local=local, non_blocking=non_blocking, uri=uri, args=args)
+
+
+def _run(local: bool, non_blocking: bool, uri: str, args: Tuple[str]) -> None:
     try:
         app = BioLibApp(uri=uri)
     except biolib_errors.BioLibError as error:

{pybiolib-1.2.174 → pybiolib-1.2.181}/biolib/experiments/experiment.py

@@ -134,7 +134,7 @@ class Experiment:
     def show(self) -> None:
         BioLibTable(
             columns_to_row_map=Experiment._table_columns_to_row_map,
-            rows=[self._experiment_dict],
+            rows=[dict(**self._experiment_dict, name=self.name, created_at=self._resource_dict['created_at'])],
             title=f'Experiment: {self.name}',
         ).print_table()
 

{pybiolib-1.2.174 → pybiolib-1.2.181}/biolib/tables.py

@@ -1,9 +1,9 @@
 from collections import OrderedDict
 
 from rich.console import Console
-from rich.table import Table, Column
+from rich.table import Column, Table
 
-from biolib.typing_utils import List, Any
+from biolib.typing_utils import Any, List
 
 
 class BioLibTable:
@@ -17,9 +17,7 @@ class BioLibTable:
         columns = [Column(header=header, **meta['params']) for header, meta in self.columns_to_row_map.items()]
         table = Table(*columns, title=self.title)
         for row in self.rows:
-            table.add_row(
-                *[str(row[column['key']]) for column in self.columns_to_row_map.values()]
-            )
+            table.add_row(*[str(row[column['key']]) for column in self.columns_to_row_map.values()])
         return table
 
     def print_table(self):

{pybiolib-1.2.174 → pybiolib-1.2.181}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.174"
+version = "1.2.181"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"