pybiolib 1.2.164.dev1__tar.gz → 1.2.166__tar.gz

{pybiolib-1.2.164.dev1 → pybiolib-1.2.166}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.164.dev1
+Version: 1.2.166
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.164.dev1 → pybiolib-1.2.166}/biolib/_runtime/runtime.py

@@ -1,11 +1,11 @@
 import json
-import logging
-import os
 import re
+from pathlib import Path
 from typing import Optional
 
 from biolib import api
 from biolib._internal.runtime import BioLibRuntimeError, BioLibRuntimeNotRecognizedError, RuntimeJobDataDict
+from biolib.biolib_logging import logger
 from biolib.typing_utils import cast
 from biolib.utils.seq_util import SeqUtil
 
@@ -68,20 +68,15 @@ class Runtime:
         if detecting a BioLib generated name, use ID of the first sequence in the fasta file
         """
 
-        def file_path_to_stem(file_path):
-            return os.path.splitext(os.path.basename(file_path))[0]
-
         # Set job name to first header if FASTA text input (random BioLib file) detected
         if re.match('^input_[A-Za-z0-9]+.*', path_to_fasta):
             first_id = next(SeqUtil.parse_fasta(path_to_fasta)).id
-            job_name = first_id.replace(' ', '_')[:60]
-
+            result_name = first_id.replace(' ', '_')[:60]
         else:
-            job_name = file_path_to_stem(path_to_fasta)
-
-        logging.debug(f"Setting job name to '{job_name}' from {path_to_fasta}")
+            result_name = Path(path_to_fasta).stem
 
-        Runtime.set_result_name_prefix(job_name)
+        logger.debug(f'Setting result name to "{result_name}" from {path_to_fasta}')
+        Runtime.set_result_name_prefix(result_name)
 
     @staticmethod
     def create_result_note(note: str) -> None:

{pybiolib-1.2.164.dev1 → pybiolib-1.2.166}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.164.dev1"
+version = "1.2.166"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"