pybiolib 1.2.121.dev1__tar.gz → 1.2.138.dev1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (123) hide show
  1. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/PKG-INFO +1 -1
  2. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/push_application.py +5 -5
  3. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/push.py +15 -2
  4. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/sdk/__init__.py +2 -1
  5. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/pyproject.toml +1 -1
  6. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/LICENSE +0 -0
  7. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/PYPI_README.md +0 -0
  8. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/__init__.py +0 -0
  9. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_data_record/data_record.py +0 -0
  10. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/__init__.py +0 -0
  11. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/data_record/__init__.py +0 -0
  12. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/data_record/data_record.py +0 -0
  13. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/data_record/push_data.py +0 -0
  14. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
  15. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/file_utils.py +0 -0
  16. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/fuse_mount/__init__.py +0 -0
  17. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
  18. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/http_client.py +0 -0
  19. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/lfs/__init__.py +0 -0
  20. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/lfs/cache.py +0 -0
  21. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/libs/__init__.py +0 -0
  22. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/libs/fusepy/__init__.py +0 -0
  23. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/runtime.py +0 -0
  24. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/__init__.py +0 -0
  25. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/app.py +0 -0
  26. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/data_record.py +0 -0
  27. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/experiment.py +0 -0
  28. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/resource.py +0 -0
  29. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/resource_version.py +0 -0
  30. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/types/typing.py +0 -0
  31. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/utils/__init__.py +0 -0
  32. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_internal/utils/multinode.py +0 -0
  33. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/_runtime/runtime.py +0 -0
  34. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/api/__init__.py +0 -0
  35. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/api/client.py +0 -0
  36. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/app/__init__.py +0 -0
  37. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/app/app.py +0 -0
  38. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/app/search_apps.py +0 -0
  39. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/__init__.py +0 -0
  40. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/api_client.py +0 -0
  41. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/app_types.py +0 -0
  42. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/auth.py +0 -0
  43. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  44. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  45. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/common_types.py +0 -0
  46. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/job_types.py +0 -0
  47. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/lfs_types.py +0 -0
  48. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_api_client/user_state.py +0 -0
  49. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/__init__.py +0 -0
  50. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  51. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/file_in_container.py +0 -0
  52. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/module_input.py +0 -0
  53. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  54. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  55. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  56. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/saved_job.py +0 -0
  57. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  58. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/system_exception.py +0 -0
  59. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/system_status_update.py +0 -0
  60. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_binary_format/utils.py +0 -0
  61. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_docker_client/__init__.py +0 -0
  62. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_download_container.py +0 -0
  63. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_errors.py +0 -0
  64. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/biolib_logging.py +0 -0
  65. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/__init__.py +0 -0
  66. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/auth.py +0 -0
  67. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/data_record.py +0 -0
  68. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/download_container.py +0 -0
  69. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/init.py +0 -0
  70. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/lfs.py +0 -0
  71. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/run.py +0 -0
  72. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/runtime.py +0 -0
  73. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/cli/start.py +0 -0
  74. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/.gitignore +0 -0
  75. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/__init__.py +0 -0
  76. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  77. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  78. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/__init__.py +0 -0
  79. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/cache_state.py +0 -0
  80. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/cache_types.py +0 -0
  81. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  82. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  83. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  84. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  85. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  86. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/executors/types.py +0 -0
  87. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  88. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  89. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/job_storage.py +0 -0
  90. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/job_worker.py +0 -0
  91. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  92. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/mappings.py +0 -0
  93. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  94. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/job_worker/utils.py +0 -0
  95. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/remote_host_proxy.py +0 -0
  96. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/socker_listener_thread.py +0 -0
  97. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/socket_sender_thread.py +0 -0
  98. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/utils.py +0 -0
  99. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/webserver/__init__.py +0 -0
  100. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  101. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/webserver/webserver.py +0 -0
  102. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/webserver/webserver_types.py +0 -0
  103. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  104. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/compute_node/webserver/worker_thread.py +0 -0
  105. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/experiments/__init__.py +0 -0
  106. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/experiments/experiment.py +0 -0
  107. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/jobs/__init__.py +0 -0
  108. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/jobs/job.py +0 -0
  109. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/jobs/job_result.py +0 -0
  110. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/jobs/types.py +0 -0
  111. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/runtime/__init__.py +0 -0
  112. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/tables.py +0 -0
  113. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/templates/__init__.py +0 -0
  114. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/templates/example_app.py +0 -0
  115. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/typing_utils.py +0 -0
  116. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/user/__init__.py +0 -0
  117. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/user/sign_in.py +0 -0
  118. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/utils/__init__.py +0 -0
  119. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/utils/app_uri.py +0 -0
  120. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/utils/cache_state.py +0 -0
  121. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/utils/multipart_uploader.py +0 -0
  122. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/utils/seq_util.py +0 -0
  123. {pybiolib-1.2.121.dev1 → pybiolib-1.2.138.dev1}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: pybiolib
3
- Version: 1.2.121.dev1
3
+ Version: 1.2.138.dev1
4
4
  Summary: BioLib Python Client
5
5
  Home-page: https://github.com/biolib
6
6
  License: MIT
@@ -76,7 +76,8 @@ def push_application(
76
76
  app_uri: str,
77
77
  app_path: str,
78
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  app_version_to_copy_images_from: Optional[str],
79
- is_dev_version: Optional[bool],
79
+ set_as_active: bool,
80
+ set_as_published: bool,
80
81
  ):
81
82
  app_uri_parts = app_uri.split(':')
82
83
  if len(app_uri_parts) > 2:
@@ -276,12 +277,11 @@ def push_application(
276
277
  app_version_uuid = new_app_version_json['public_id']
277
278
  api.client.post(
278
279
  path=f'/app-versions/{app_version_uuid}/complete-push/',
279
- data={'set_as_active': not is_dev_version},
280
+ data={'set_as_active': set_as_active, 'set_as_published': set_as_published},
280
281
  )
281
282
 
282
283
  sematic_version = f"{new_app_version_json['major']}.{new_app_version_json['minor']}.{new_app_version_json['patch']}"
283
- logger.info(
284
- f"Successfully pushed new {'development ' if is_dev_version else ''}version {sematic_version} of {app_uri}."
285
- )
284
+ version_name = 'development ' if not set_as_published else ''
285
+ logger.info(f'Successfully pushed new {version_name}version {sematic_version} of {app_uri}.')
286
286
 
287
287
  return {'app_uri': app_uri, 'sematic_version': sematic_version}
@@ -12,12 +12,25 @@ from biolib.biolib_logging import logger, logger_no_user_data
12
12
  @click.option('--path', default='.', required=False)
13
13
  @click.option('--copy-images-from-version', required=False)
14
14
  @click.option('--dev', is_flag=True, default=False, required=False)
15
- def push(uri, path: str, copy_images_from_version: Optional[str], dev: bool) -> None:
15
+ @click.option('--pre-release', is_flag=True, default=False, required=False)
16
+ def push(uri, path: str, copy_images_from_version: Optional[str], dev: bool, pre_release: bool) -> None:
16
17
  logger.configure(default_log_level=logging.INFO)
17
18
  logger_no_user_data.configure(default_log_level=logging.INFO)
19
+ set_as_active = True
20
+ set_as_published = True
21
+ if dev and pre_release:
22
+ print('Error: you cannot set both --dev and --pre-release, please select one.')
23
+ exit(1)
24
+ elif dev:
25
+ set_as_active = False
26
+ set_as_published = False
27
+ elif pre_release:
28
+ set_as_active = False
29
+ set_as_published = True
18
30
  push_application(
19
31
  app_path=path,
20
32
  app_uri=uri,
21
33
  app_version_to_copy_images_from=copy_images_from_version,
22
- is_dev_version=dev,
34
+ set_as_active=set_as_active,
35
+ set_as_published=set_as_published,
23
36
  )
@@ -16,7 +16,8 @@ def push_app_version(uri: str, path: str) -> _BioLibApp:
16
16
  app_uri=uri,
17
17
  app_path=path,
18
18
  app_version_to_copy_images_from=None,
19
- is_dev_version=True,
19
+ set_as_active=False,
20
+ set_as_published=False,
20
21
  )
21
22
  uri = f'{push_data["app_uri"]}:{push_data["sematic_version"]}'
22
23
  return _BioLibApp(uri)
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "pybiolib"
3
- version = "1.2.121.dev1"
3
+ version = "1.2.138.dev1"
4
4
  description = "BioLib Python Client"
5
5
  readme = "PYPI_README.md"
6
6
  license = "MIT"
File without changes