pybiolib 1.2.111__tar.gz → 1.2.116.dev1__tar.gz

{pybiolib-1.2.111 → pybiolib-1.2.116.dev1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.111
+Version: 1.2.116.dev1
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.111 → pybiolib-1.2.116.dev1}/biolib/biolib_binary_format/utils.py

@@ -1,9 +1,10 @@
-from abc import ABC, abstractmethod
 import io
 import math
-from typing import Optional, Callable
-from biolib.typing_utils import Iterator
+from abc import ABC, abstractmethod
+from typing import Callable, Optional
+
 from biolib._internal.http_client import HttpClient
+from biolib.typing_utils import Iterator
 
 
 class RemoteEndpoint(ABC):
@@ -13,7 +14,6 @@ class RemoteEndpoint(ABC):
 
 
 class IndexableBuffer(ABC):
-
     def __init__(self):
         self.pointer = 0
 
@@ -44,7 +44,6 @@ class IndexableBuffer(ABC):
 
 
 class LocalFileIndexableBuffer(IndexableBuffer):
-
     def __init__(self, filename: str):
         super().__init__()
         self._filehandle = open(filename, 'rb')
@@ -66,7 +65,6 @@ class LocalFileIndexableBuffer(IndexableBuffer):
 
 
 class RemoteIndexableBuffer(IndexableBuffer):
-
     def __init__(self, endpoint: RemoteEndpoint):
         super().__init__()
         self._endpoint = endpoint
@@ -92,7 +90,6 @@ class RemoteIndexableBuffer(IndexableBuffer):
 
 
 class InMemoryIndexableBuffer(IndexableBuffer):
-
     def __init__(self, data: bytes):
         super().__init__()
         self._buffer = data
@@ -107,14 +104,13 @@ class InMemoryIndexableBuffer(IndexableBuffer):
 
 
 class LazyLoadedFile:
-
     def __init__(
-            self,
-            path: str,
-            buffer: IndexableBuffer,
-            start: Optional[int],
-            length: int,
-            start_func: Optional[Callable[[], int]] = None,
+        self,
+        path: str,
+        buffer: IndexableBuffer,
+        start: Optional[int],
+        length: int,
+        start_func: Optional[Callable[[], int]] = None,
     ):
         self._path = path
         self._buffer = buffer
@@ -152,10 +148,7 @@ class LazyLoadedFile:
         start_offset = start + self.start
         # make sure length doesn't go outside file boundaries
         length_to_end_of_file = max(self._length - start, 0)
-        if length is None:
-            length_to_request = length_to_end_of_file
-        else:
-            length_to_request = min(length, length_to_end_of_file)
+        length_to_request = length_to_end_of_file if length is None else min(length, length_to_end_of_file)
         return self._buffer.get_data(start=start_offset, length=length_to_request)
 
     def get_data_iterator(self) -> Iterator[bytes]:
@@ -165,7 +158,10 @@ class LazyLoadedFile:
             chunk_size = 10_000_000
             chunks_to_yield = math.ceil(self._length / chunk_size)
             for chunk_idx in range(chunks_to_yield - 1):
-                yield self._buffer.get_data(start=self.start+chunk_idx*chunk_size, length=chunk_size)
-            data_already_yielded = (chunks_to_yield - 1)*chunk_size
-            yield self._buffer.get_data(start=self.start+data_already_yielded,
-                                        length=self._length - data_already_yielded)
+                yield self._buffer.get_data(start=self.start + chunk_idx * chunk_size, length=chunk_size)
+
+            data_already_yielded = (chunks_to_yield - 1) * chunk_size
+            yield self._buffer.get_data(
+                start=self.start + data_already_yielded,
+                length=self._length - data_already_yielded,
+            )

{pybiolib-1.2.111 → pybiolib-1.2.116.dev1}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.111"
+version = "1.2.116.dev1"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"