pybiolib 1.2.1036.dev1__tar.gz → 1.2.1045__tar.gz

{pybiolib-1.2.1036.dev1 → pybiolib-1.2.1045}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.1036.dev1
+Version: 1.2.1045
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.1036.dev1 → pybiolib-1.2.1045}/biolib/_runtime/runtime.py

@@ -30,8 +30,12 @@ class Runtime:
         return Runtime._get_job_data()['job_auth_token']
 
     @staticmethod
-    def get_job_requested_machine() -> str:
-        return Runtime._get_job_data()['job_requested_machine']
+    def get_job_requested_machine() -> Optional[str]:
+        job_data = Runtime._get_job_data()
+        job_requested_machine = job_data.get('job_requested_machine')
+        if not job_requested_machine:
+            return None
+        return job_requested_machine
 
     @staticmethod
     def get_app_uri() -> str:

{pybiolib-1.2.1036.dev1 → pybiolib-1.2.1045}/biolib/biolib_api_client/biolib_app_api.py

@@ -99,6 +99,15 @@ class BiolibAppApi:
 
             raise error
 
+    @staticmethod
+    def create_app(uri: str):
+        uri = _get_app_uri_from_str(uri)
+        try:
+            response = biolib.api.client.post(path='/resources/apps/', data={'uri': uri})
+            return response.json()
+        except HttpError as error:
+            raise error
+
     @staticmethod
     def push_app_version(
         app_id,

{pybiolib-1.2.1036.dev1 → pybiolib-1.2.1045}/biolib/cli/init.py

@@ -4,11 +4,17 @@ import sys
 
 import click
 
-from biolib import utils  # Import like this to let BASE_URL_IS_PUBLIC_BIOLIB be set correctly
+from biolib import (
+    biolib_errors,
+    utils,  # Import like this to let BASE_URL_IS_PUBLIC_BIOLIB be set correctly
+)
 from biolib._internal.add_copilot_prompts import add_copilot_prompts
 from biolib._internal.add_gui_files import add_gui_files
 from biolib._internal.string_utils import normalize_for_docker_tag
 from biolib._internal.templates import templates
+from biolib.biolib_api_client.api_client import BiolibApiClient
+from biolib.biolib_api_client.biolib_app_api import BiolibAppApi
+from biolib.user.sign_in import sign_in
 from biolib.utils import BIOLIB_PACKAGE_VERSION
 
 
@@ -19,6 +25,36 @@ def init() -> None:
     app_uri = input('What URI do you want to create the application under? (leave blank to skip): ')
     app_name = app_uri.split('/')[-1] if app_uri else None
     docker_tag = normalize_for_docker_tag(app_name) if app_name else None
+
+    if app_uri:
+        try:
+            if BiolibApiClient.is_reauthentication_needed():
+                sign_in_input = input('You need to sign in to validate/create apps. Would you like to sign in? [y/N]: ')
+                if sign_in_input.lower() in ['y', 'yes']:
+                    sign_in()
+                else:
+                    print('Skipping app validation and creation. You can set the URI in .biolib/config.yml later.')
+                    return
+
+            BiolibAppApi.get_by_uri(app_uri)
+            print(f'App {app_uri} already exists.')
+        except biolib_errors.NotFound:
+            create_app_input = input(f'App {app_uri} does not exist. Would you like to create it? [y/N]: ')
+            if create_app_input.lower() in ['y', 'yes']:
+                try:
+                    BiolibAppApi.create_app(app_uri)
+                    print(f'Successfully created app {app_uri}')
+                except Exception as e:
+                    print(f'Failed to create app {app_uri}: {str(e)}')
+                    print('You can create the app manually later or set the URI in .biolib/config.yml')
+            else:
+                print(
+                    'App creation skipped. You can create the app manually later or set the URI in .biolib/config.yml'
+                )
+        except Exception as e:
+            print(f'Failed to validate app {app_uri}: {str(e)}')
+            print('Continuing with initialization...')
+
     if not app_uri:
         print(
             'Remember to set the app URI in the .biolib/config.yml file later, '

{pybiolib-1.2.1036.dev1 → pybiolib-1.2.1045}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.1036.dev1"
+version = "1.2.1045"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"