pybiolib 1.2.1018__tar.gz → 1.2.1027__tar.gz

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.1018
+Version: 1.2.1027
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/biolib/_internal/templates/gui_template/Dockerfile

@@ -23,4 +23,4 @@ COPY run.py .
 
 RUN mkdir output
 
-COPY --from=gui_builder /home/biolib/dist/index.html gui.html
+COPY --from=gui_builder /home/biolib/dist/index.html result.html

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/biolib/_internal/templates/init_template/.biolib/config.yml

@@ -10,6 +10,7 @@ modules:
         output_files:
             - COPY /home/biolib/output/ /
 
+BIOLIB_REPLACE_GUI_CONFIG
 arguments:
     -
         key: --input

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/biolib/_internal/templates/init_template/run.sh

@@ -1,3 +1,4 @@
 #!/bin/bash
 set -e
+BIOLIB_REPLACE_GUI_MV_COMMAND
 python3 run.py "$@"

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/biolib/cli/init.py

@@ -98,6 +98,12 @@ def init() -> None:
                         )
                         new_content = new_content.replace('BIOLIB_REPLACE_APP_NAME', replace_app_name)
 
+                        gui_config = "main_output_file: '/result.html'\n" if include_gui else ''
+                        new_content = new_content.replace('BIOLIB_REPLACE_GUI_CONFIG\n', gui_config)
+
+                        gui_mv_command = 'mv result.html output/result.html\n' if include_gui else ''
+                        new_content = new_content.replace('BIOLIB_REPLACE_GUI_MV_COMMAND\n', gui_mv_command)
+
                         with open(destination_file, 'w') as f:
                             f.write(new_content)
                     except UnicodeDecodeError:

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/biolib/compute_node/remote_host_proxy.py

@@ -273,6 +273,16 @@ http {{
             proxy_ssl_server_name    on;
         }}
 
+        location ~ "^/api/auth/oauth-token-exchange/$" {{
+            # Note: Using $1 here as URI part from regex must be used for proxy_pass
+            proxy_pass               https://$upstream_hostname/api/auth/oauth-token-exchange/$1;
+            proxy_set_header         authorization "";
+            proxy_set_header         compute-node-auth-token "{compute_node_auth_token}";
+            proxy_set_header         job-uuid "{self._job_uuid}";
+            proxy_set_header         cookie "";
+            proxy_ssl_server_name    on;
+        }}
+
         location /api/lfs/ {{
             proxy_pass               https://$upstream_hostname$request_uri;
             proxy_set_header         authorization "";

{pybiolib-1.2.1018 → pybiolib-1.2.1027}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.1018"
+version = "1.2.1027"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"