pybiolib 1.1.2097__tar.gz → 1.1.2109__tar.gz

{pybiolib-1.1.2097 → pybiolib-1.1.2109}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2097
+Version: 1.1.2109
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2097 → pybiolib-1.1.2109}/biolib/compute_node/job_worker/executors/docker_executor.py

@@ -270,6 +270,8 @@ class DockerExecutor:
     # TODO: type this method
     def _initialize_docker_container(self, module_input):
         try:
+            job_uuid = self._options['job']['public_id']
+            logger_no_user_data.debug(f'Job "{job_uuid}" initializing Docker container...')
             module = self._options['module']
             logger.debug(f"Initializing docker container with command: {module['command']}")
 
@@ -314,6 +316,7 @@ class DockerExecutor:
                     }
                 )
 
+            logger_no_user_data.debug(f'Job "{job_uuid}" initializing Docker container. Getting IPs for proxies...')
             for proxy in self._options['remote_host_proxies']:
                 proxy_ip = proxy.get_ip_address_on_network(internal_network)
                 if proxy.is_app_caller_proxy:
@@ -332,6 +335,7 @@ class DockerExecutor:
                 else:
                     extra_hosts[proxy.hostname] = proxy_ip
 
+            logger_no_user_data.debug(f'Job "{job_uuid}" initializing Docker container. Constructing container args...')
             create_container_args = {
                 'environment': environment_vars,
                 'extra_hosts': extra_hosts,
@@ -368,9 +372,10 @@ class DockerExecutor:
             if docker_runtime is not None:
                 create_container_args['runtime'] = docker_runtime
 
-            self._docker_container = BiolibDockerClient.get_docker_client().containers.create(**create_container_args)
-
-            logger_no_user_data.debug('Finished initializing docker container')
+            docker_client = BiolibDockerClient.get_docker_client()
+            logger_no_user_data.debug(f'Job "{job_uuid}" initializing Docker container. Creating container...')
+            self._docker_container = docker_client.containers.create(**create_container_args)
+            logger_no_user_data.debug(f'Job "{job_uuid}" finished initializing Docker container.')
         except Exception as exception:
             raise ComputeProcessException(
                 exception, SystemExceptionCodes.FAILED_TO_START_COMPUTE_CONTAINER.value, self._send_system_exception

{pybiolib-1.1.2097 → pybiolib-1.1.2109}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.1.2097"
+version = "1.1.2109"
 description = "BioLib Python Client"
 readme = "README.md"
 license = "MIT"