pybiolib 1.1.2025__tar.gz → 1.1.2031__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (113) hide show
  1. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/PKG-INFO +1 -1
  2. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/api/__init__.py +1 -0
  3. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/api/client.py +30 -15
  4. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/pyproject.toml +1 -1
  5. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/LICENSE +0 -0
  6. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/README.md +0 -0
  7. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/__init__.py +0 -0
  8. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/__init__.py +0 -0
  9. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/data_record/__init__.py +0 -0
  10. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/data_record/data_record.py +0 -0
  11. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
  12. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/fuse_mount/__init__.py +0 -0
  13. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
  14. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/http_client.py +0 -0
  15. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/libs/__init__.py +0 -0
  16. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/libs/fusepy/__init__.py +0 -0
  17. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/push_application.py +0 -0
  18. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/runtime.py +0 -0
  19. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/_internal/utils/__init__.py +0 -0
  20. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/app/__init__.py +0 -0
  21. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/app/app.py +0 -0
  22. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/app/search_apps.py +0 -0
  23. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/__init__.py +0 -0
  24. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/api_client.py +0 -0
  25. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/app_types.py +0 -0
  26. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/auth.py +0 -0
  27. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  28. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  29. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/common_types.py +0 -0
  30. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/job_types.py +0 -0
  31. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/lfs_types.py +0 -0
  32. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_api_client/user_state.py +0 -0
  33. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/__init__.py +0 -0
  34. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  35. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/file_in_container.py +0 -0
  36. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/module_input.py +0 -0
  37. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  38. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  39. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  40. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/saved_job.py +0 -0
  41. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  42. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/system_exception.py +0 -0
  43. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/system_status_update.py +0 -0
  44. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_binary_format/utils.py +0 -0
  45. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_docker_client/__init__.py +0 -0
  46. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_download_container.py +0 -0
  47. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_errors.py +0 -0
  48. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/biolib_logging.py +0 -0
  49. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/__init__.py +0 -0
  50. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/auth.py +0 -0
  51. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/data_record.py +0 -0
  52. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/download_container.py +0 -0
  53. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/init.py +0 -0
  54. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/lfs.py +0 -0
  55. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/push.py +0 -0
  56. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/run.py +0 -0
  57. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/runtime.py +0 -0
  58. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/cli/start.py +0 -0
  59. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/.gitignore +0 -0
  60. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/__init__.py +0 -0
  61. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  62. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  63. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/__init__.py +0 -0
  64. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/cache_state.py +0 -0
  65. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/cache_types.py +0 -0
  66. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  67. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  68. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  69. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  70. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  71. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/executors/types.py +0 -0
  72. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  73. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  74. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/job_storage.py +0 -0
  75. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/job_worker.py +0 -0
  76. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  77. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/mappings.py +0 -0
  78. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  79. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/job_worker/utils.py +0 -0
  80. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/remote_host_proxy.py +0 -0
  81. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/socker_listener_thread.py +0 -0
  82. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/socket_sender_thread.py +0 -0
  83. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/utils.py +0 -0
  84. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/webserver/__init__.py +0 -0
  85. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  86. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/webserver/webserver.py +0 -0
  87. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/webserver/webserver_types.py +0 -0
  88. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  89. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/compute_node/webserver/worker_thread.py +0 -0
  90. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/experiments/__init__.py +0 -0
  91. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/experiments/experiment.py +0 -0
  92. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/experiments/types.py +0 -0
  93. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/jobs/__init__.py +0 -0
  94. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/jobs/job.py +0 -0
  95. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/jobs/job_result.py +0 -0
  96. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/jobs/types.py +0 -0
  97. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/lfs/__init__.py +0 -0
  98. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/lfs/cache.py +0 -0
  99. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/lfs/utils.py +0 -0
  100. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/runtime/__init__.py +0 -0
  101. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/sdk/__init__.py +0 -0
  102. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/tables.py +0 -0
  103. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/templates/__init__.py +0 -0
  104. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/templates/example_app.py +0 -0
  105. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/typing_utils.py +0 -0
  106. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/user/__init__.py +0 -0
  107. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/user/sign_in.py +0 -0
  108. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/utils/__init__.py +0 -0
  109. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/utils/app_uri.py +0 -0
  110. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/utils/cache_state.py +0 -0
  111. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/utils/multipart_uploader.py +0 -0
  112. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/utils/seq_util.py +0 -0
  113. {pybiolib-1.1.2025 → pybiolib-1.1.2031}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: pybiolib
3
- Version: 1.1.2025
3
+ Version: 1.1.2031
4
4
  Summary: BioLib Python Client
5
5
  Home-page: https://github.com/biolib
6
6
  License: MIT
@@ -1,4 +1,5 @@
1
1
  from biolib._internal.http_client import HttpClient
2
+
2
3
  from .client import ApiClient as _ApiClient
3
4
 
4
5
  _client = _ApiClient()
@@ -1,8 +1,10 @@
1
- from urllib.parse import urljoin, urlencode
1
+ from urllib.parse import urlencode, urljoin
2
2
 
3
- from biolib.typing_utils import Dict, Optional, Union
3
+ import importlib_metadata
4
+
5
+ from biolib._internal.http_client import HttpClient, HttpResponse
4
6
  from biolib.biolib_api_client import BiolibApiClient as DeprecatedApiClient
5
- from biolib._internal.http_client import HttpResponse, HttpClient
7
+ from biolib.typing_utils import Dict, Optional, Union, cast
6
8
 
7
9
  OptionalHeaders = Union[
8
10
  Optional[Dict[str, str]],
@@ -10,14 +12,24 @@ OptionalHeaders = Union[
10
12
  ]
11
13
 
12
14
 
15
+ def _get_biolib_package_version() -> str:
16
+ # try fetching version, if it fails (usually when in dev), add default
17
+ try:
18
+ return cast(str, importlib_metadata.version('pybiolib'))
19
+ except importlib_metadata.PackageNotFoundError:
20
+ return '0.0.0'
21
+
22
+
13
23
  class ApiClient(HttpClient):
24
+ _biolib_package_version: str = _get_biolib_package_version()
25
+
14
26
  def get(
15
- self,
16
- path: str,
17
- params: Optional[Dict[str, Union[str, int]]] = None,
18
- headers: OptionalHeaders = None,
19
- authenticate: bool = True,
20
- retries: int = 10,
27
+ self,
28
+ path: str,
29
+ params: Optional[Dict[str, Union[str, int]]] = None,
30
+ headers: OptionalHeaders = None,
31
+ authenticate: bool = True,
32
+ retries: int = 10,
21
33
  ) -> HttpResponse:
22
34
  return self.request(
23
35
  headers=self._get_headers(opt_headers=headers, authenticate=authenticate),
@@ -27,12 +39,12 @@ class ApiClient(HttpClient):
27
39
  )
28
40
 
29
41
  def post(
30
- self,
31
- path: str,
32
- data: Optional[Union[Dict, bytes]] = None,
33
- headers: OptionalHeaders = None,
34
- authenticate: bool = True,
35
- retries: int = 5,
42
+ self,
43
+ path: str,
44
+ data: Optional[Union[Dict, bytes]] = None,
45
+ headers: OptionalHeaders = None,
46
+ authenticate: bool = True,
47
+ retries: int = 5,
36
48
  ) -> HttpResponse:
37
49
  return self.request(
38
50
  data=data,
@@ -74,6 +86,9 @@ class ApiClient(HttpClient):
74
86
  if access_token and authenticate:
75
87
  headers['Authorization'] = f'Bearer {access_token}'
76
88
 
89
+ headers['client-type'] = 'biolib-python'
90
+ headers['client-version'] = ApiClient._biolib_package_version
91
+
77
92
  return headers
78
93
 
79
94
  @staticmethod
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "pybiolib"
3
- version = "1.1.2025"
3
+ version = "1.1.2031"
4
4
  description = "BioLib Python Client"
5
5
  readme = "README.md"
6
6
  license = "MIT"
File without changes
File without changes