pybiolib 1.1.2023__tar.gz → 1.1.2031__tar.gz

{pybiolib-1.1.2023 → pybiolib-1.1.2031}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2023
+Version: 1.1.2031
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2023 → pybiolib-1.1.2031}/biolib/_internal/data_record/data_record.py

@@ -22,11 +22,6 @@ PathFilter = Union[str, Callable[[str], bool]]
 class DataRecord:
     def __init__(self, uri: str):
         self._uri = uri
-        uri_parsed = parse_app_uri(uri, use_account_as_name_default=False)
-        if not uri_parsed['app_name']:
-            raise ValueError('Expected parameter "uri" to contain resource name')
-
-        self._name = uri_parsed['app_name']
 
     def __repr__(self):
         return f'DataRecord: {self._uri}'
@@ -37,7 +32,11 @@ class DataRecord:
 
     @property
     def name(self) -> str:
-        return self._name
+        uri_parsed = parse_app_uri(self.uri, use_account_as_name_default=False)
+        if not uri_parsed['app_name']:
+            raise ValueError('Expected parameter "uri" to contain resource name')
+
+        return uri_parsed['app_name']
 
     def list_files(self, path_filter: Optional[PathFilter] = None) -> List[LazyLoadedFile]:
         app_response: AppGetResponse = api_client.get(path='/app/', params={'uri': self._uri}).json()
@@ -76,6 +75,10 @@ class DataRecord:
     def save_files(self, output_dir: str, path_filter: Optional[PathFilter] = None) -> None:
         self.download_files(output_dir=output_dir, path_filter=path_filter)
 
+    def update(self, data_path: str) -> None:
+        assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'
+        self._uri = lfs.push_large_file_system(lfs_uri=self._uri, input_dir=data_path)
+
     @staticmethod
     def create(destination: str, data_path: str, name: Optional[str] = None) -> 'DataRecord':
         assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'

{pybiolib-1.1.2023 → pybiolib-1.1.2031}/biolib/api/__init__.py

@@ -1,4 +1,5 @@
 from biolib._internal.http_client import HttpClient
+
 from .client import ApiClient as _ApiClient
 
 _client = _ApiClient()

{pybiolib-1.1.2023 → pybiolib-1.1.2031}/biolib/api/client.py

@@ -1,8 +1,10 @@
-from urllib.parse import urljoin, urlencode
+from urllib.parse import urlencode, urljoin
 
-from biolib.typing_utils import Dict, Optional, Union
+import importlib_metadata
+
+from biolib._internal.http_client import HttpClient, HttpResponse
 from biolib.biolib_api_client import BiolibApiClient as DeprecatedApiClient
-from biolib._internal.http_client import HttpResponse, HttpClient
+from biolib.typing_utils import Dict, Optional, Union, cast
 
 OptionalHeaders = Union[
     Optional[Dict[str, str]],
@@ -10,14 +12,24 @@ OptionalHeaders = Union[
 ]
 
 
+def _get_biolib_package_version() -> str:
+    # try fetching version, if it fails (usually when in dev), add default
+    try:
+        return cast(str, importlib_metadata.version('pybiolib'))
+    except importlib_metadata.PackageNotFoundError:
+        return '0.0.0'
+
+
 class ApiClient(HttpClient):
+    _biolib_package_version: str = _get_biolib_package_version()
+
     def get(
-            self,
-            path: str,
-            params: Optional[Dict[str, Union[str, int]]] = None,
-            headers: OptionalHeaders = None,
-            authenticate: bool = True,
-            retries: int = 10,
+        self,
+        path: str,
+        params: Optional[Dict[str, Union[str, int]]] = None,
+        headers: OptionalHeaders = None,
+        authenticate: bool = True,
+        retries: int = 10,
     ) -> HttpResponse:
         return self.request(
             headers=self._get_headers(opt_headers=headers, authenticate=authenticate),
@@ -27,12 +39,12 @@ class ApiClient(HttpClient):
         )
 
     def post(
-            self,
-            path: str,
-            data: Optional[Union[Dict, bytes]] = None,
-            headers: OptionalHeaders = None,
-            authenticate: bool = True,
-            retries: int = 5,
+        self,
+        path: str,
+        data: Optional[Union[Dict, bytes]] = None,
+        headers: OptionalHeaders = None,
+        authenticate: bool = True,
+        retries: int = 5,
     ) -> HttpResponse:
         return self.request(
             data=data,
@@ -74,6 +86,9 @@ class ApiClient(HttpClient):
         if access_token and authenticate:
             headers['Authorization'] = f'Bearer {access_token}'
 
+        headers['client-type'] = 'biolib-python'
+        headers['client-version'] = ApiClient._biolib_package_version
+
         return headers
 
     @staticmethod

{pybiolib-1.1.2023 → pybiolib-1.1.2031}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.1.2023"
+version = "1.1.2031"
 description = "BioLib Python Client"
 readme = "README.md"
 license = "MIT"