pybiolib 1.1.2017__tar.gz → 1.1.2025__tar.gz

{pybiolib-1.1.2017 → pybiolib-1.1.2025}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2017
+Version: 1.1.2025
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2017 → pybiolib-1.1.2025}/biolib/_internal/data_record/data_record.py

@@ -22,11 +22,6 @@ PathFilter = Union[str, Callable[[str], bool]]
 class DataRecord:
     def __init__(self, uri: str):
         self._uri = uri
-        uri_parsed = parse_app_uri(uri, use_account_as_name_default=False)
-        if not uri_parsed['app_name']:
-            raise ValueError('Expected parameter "uri" to contain resource name')
-
-        self._name = uri_parsed['app_name']
 
     def __repr__(self):
         return f'DataRecord: {self._uri}'
@@ -37,7 +32,11 @@ class DataRecord:
 
     @property
     def name(self) -> str:
-        return self._name
+        uri_parsed = parse_app_uri(self.uri, use_account_as_name_default=False)
+        if not uri_parsed['app_name']:
+            raise ValueError('Expected parameter "uri" to contain resource name')
+
+        return uri_parsed['app_name']
 
     def list_files(self, path_filter: Optional[PathFilter] = None) -> List[LazyLoadedFile]:
         app_response: AppGetResponse = api_client.get(path='/app/', params={'uri': self._uri}).json()
@@ -76,6 +75,10 @@ class DataRecord:
     def save_files(self, output_dir: str, path_filter: Optional[PathFilter] = None) -> None:
         self.download_files(output_dir=output_dir, path_filter=path_filter)
 
+    def update(self, data_path: str) -> None:
+        assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'
+        self._uri = lfs.push_large_file_system(lfs_uri=self._uri, input_dir=data_path)
+
     @staticmethod
     def create(destination: str, data_path: str, name: Optional[str] = None) -> 'DataRecord':
         assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'

{pybiolib-1.1.2017 → pybiolib-1.1.2025}/biolib/experiments/experiment.py

@@ -2,7 +2,8 @@ import time
 from collections import OrderedDict
 
 from biolib import api
-from biolib.biolib_errors import BioLibError
+from biolib._internal.http_client import HttpError
+from biolib.biolib_errors import BioLibError, NotFound
 from biolib.experiments.types import ExperimentDict
 from biolib.jobs.job import Job
 from biolib.jobs.types import JobsPaginatedResponse
@@ -22,8 +23,8 @@ class Experiment:
         }
     )
 
-    def __init__(self, name: str):
-        self._experiment_dict: ExperimentDict = self._create_in_backend_or_get_experiment_dict(name)
+    def __init__(self, uri: str):
+        self._experiment_dict: ExperimentDict = self._get_or_create_by_uri(uri)
 
     def __enter__(self):
         Experiment._BIOLIB_EXPERIMENTS.append(self)
@@ -151,13 +152,33 @@ class Experiment:
 
         return jobs
 
-    def rename(self, new_name: str) -> None:
-        api.client.patch(f'/apps/{self.uuid}/', data={'name': new_name}, params={'resource_type': 'experiment'})
+    def rename(self, name: Optional[str] = None, destination: Optional[str] = None) -> None:
+        if destination:
+            try:
+                account_id = api.client.get(path=f'/account/{destination}/').json()['uuid']
+            except HttpError as error:
+                if error.code == 404:
+                    raise NotFound(f'Destination "{destination}" not found.') from None
+                else:
+                    raise error
+
+            api.client.patch(
+                path=f'/apps/{self.uuid}/',
+                data={'account_id': account_id},
+                params={'resource_type': 'experiment'},
+            )
+
+        if name:
+            api.client.patch(path=f'/apps/{self.uuid}/', data={'name': name}, params={'resource_type': 'experiment'})
+
         self._refetch_experiment_dict()
 
-    def _create_in_backend_or_get_experiment_dict(self, name: str) -> ExperimentDict:
-        # This endpoint returns experiment dict if already created
-        experiment_dict: ExperimentDict = api.client.post(path='/experiments/', data={'name': name}).json()
+    @staticmethod
+    def _get_or_create_by_uri(uri: str) -> ExperimentDict:
+        experiment_dict: ExperimentDict = api.client.post(
+            path='/experiments/',
+            data={'uri' if '/' in uri else 'name': uri},
+        ).json()
         return experiment_dict
 
     def _refetch_experiment_dict(self) -> None:

{pybiolib-1.1.2017 → pybiolib-1.1.2025}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.1.2017"
+version = "1.1.2025"
 description = "BioLib Python Client"
 readme = "README.md"
 license = "MIT"