pybiolib 1.1.2004__tar.gz → 1.1.2011__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/PKG-INFO +1 -1
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/jobs/job_result.py +15 -3
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/pyproject.toml +1 -1
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/LICENSE +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/README.md +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/data_record/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/data_record/data_record.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/fuse_mount/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/http_client.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/libs/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/libs/fusepy/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/push_application.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/runtime.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/_internal/utils/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/api/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/api/client.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/app/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/app/app.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/app/search_apps.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/api_client.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/app_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/auth.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/biolib_app_api.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/biolib_job_api.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/common_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/job_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/lfs_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_api_client/user_state.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/file_in_container.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/module_input.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/module_output_v2.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/saved_job.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/system_exception.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/system_status_update.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_binary_format/utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_docker_client/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_download_container.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_errors.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/biolib_logging.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/auth.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/data_record.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/download_container.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/init.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/lfs.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/push.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/run.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/runtime.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/cli/start.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/.gitignore +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/cloud_utils/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/cache_state.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/cache_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/executors/types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/job_storage.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/job_worker.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/large_file_system.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/mappings.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/job_worker/utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/remote_host_proxy.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/socker_listener_thread.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/socket_sender_thread.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/webserver/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/webserver/webserver.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/webserver/webserver_types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/webserver/webserver_utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/compute_node/webserver/worker_thread.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/experiments/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/experiments/experiment.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/experiments/types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/jobs/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/jobs/job.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/jobs/types.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/lfs/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/lfs/cache.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/lfs/utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/runtime/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/sdk/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/tables.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/templates/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/templates/example_app.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/typing_utils.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/user/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/user/sign_in.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/utils/__init__.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/utils/app_uri.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/utils/cache_state.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/utils/multipart_uploader.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/utils/seq_util.py +0 -0
- {pybiolib-1.1.2004 → pybiolib-1.1.2011}/biolib/utils/zip/remote_zip.py +0 -0
@@ -74,9 +74,21 @@ class JobResult:
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if dir_path:
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dir_path.mkdir(parents=True, exist_ok=True)
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# write content to temporary (partial) file
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partial_path = destination_file_path.with_suffix(f'.{self._job_uuid}.partial_biolib_download')
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file_start = file.start
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data_to_download = file.length
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if partial_path.exists():
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data_already_downloaded = partial_path.stat().st_size
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file_start += data_already_downloaded
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data_to_download -= data_already_downloaded
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with open(partial_path, mode='ab') as partial_file:
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for chunk in stream_seeker.seek_and_read(file_start=file_start, file_length=data_to_download):
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partial_file.write(chunk)
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# rename partial file to actual file name
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partial_path.rename(destination_file_path)
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def get_output_file(self, filename) -> LazyLoadedFile:
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files = self._get_module_output().get_files()
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