pybiolib 1.1.1988__tar.gz → 1.1.1995__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (113) hide show
  1. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/PKG-INFO +1 -1
  2. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/app_types.py +1 -0
  3. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/job_worker.py +1 -0
  4. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/remote_host_proxy.py +11 -2
  5. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/pyproject.toml +1 -1
  6. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/LICENSE +0 -0
  7. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/README.md +0 -0
  8. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/__init__.py +0 -0
  9. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/__init__.py +0 -0
  10. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/data_record/__init__.py +0 -0
  11. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/data_record/data_record.py +0 -0
  12. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
  13. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/fuse_mount/__init__.py +0 -0
  14. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
  15. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/http_client.py +0 -0
  16. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/libs/__init__.py +0 -0
  17. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/libs/fusepy/__init__.py +0 -0
  18. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/push_application.py +0 -0
  19. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/runtime.py +0 -0
  20. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/_internal/utils/__init__.py +0 -0
  21. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/api/__init__.py +0 -0
  22. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/api/client.py +0 -0
  23. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/app/__init__.py +0 -0
  24. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/app/app.py +0 -0
  25. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/app/search_apps.py +0 -0
  26. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/__init__.py +0 -0
  27. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/api_client.py +0 -0
  28. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/auth.py +0 -0
  29. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  30. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  31. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/common_types.py +0 -0
  32. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/job_types.py +0 -0
  33. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/lfs_types.py +0 -0
  34. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_api_client/user_state.py +0 -0
  35. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/__init__.py +0 -0
  36. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  37. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/file_in_container.py +0 -0
  38. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/module_input.py +0 -0
  39. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  40. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  41. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  42. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/saved_job.py +0 -0
  43. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  44. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/system_exception.py +0 -0
  45. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/system_status_update.py +0 -0
  46. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_binary_format/utils.py +0 -0
  47. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_docker_client/__init__.py +0 -0
  48. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_download_container.py +0 -0
  49. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_errors.py +0 -0
  50. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/biolib_logging.py +0 -0
  51. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/__init__.py +0 -0
  52. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/auth.py +0 -0
  53. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/data_record.py +0 -0
  54. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/download_container.py +0 -0
  55. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/init.py +0 -0
  56. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/lfs.py +0 -0
  57. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/push.py +0 -0
  58. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/run.py +0 -0
  59. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/runtime.py +0 -0
  60. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/cli/start.py +0 -0
  61. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/.gitignore +0 -0
  62. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/__init__.py +0 -0
  63. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  64. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  65. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/__init__.py +0 -0
  66. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/cache_state.py +0 -0
  67. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/cache_types.py +0 -0
  68. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  69. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  70. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  71. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  72. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  73. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/executors/types.py +0 -0
  74. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  75. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  76. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/job_storage.py +0 -0
  77. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  78. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/mappings.py +0 -0
  79. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  80. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/job_worker/utils.py +0 -0
  81. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/socker_listener_thread.py +0 -0
  82. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/socket_sender_thread.py +0 -0
  83. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/utils.py +0 -0
  84. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/webserver/__init__.py +0 -0
  85. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  86. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/webserver/webserver.py +0 -0
  87. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/webserver/webserver_types.py +0 -0
  88. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  89. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/compute_node/webserver/worker_thread.py +0 -0
  90. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/experiments/__init__.py +0 -0
  91. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/experiments/experiment.py +0 -0
  92. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/experiments/types.py +0 -0
  93. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/jobs/__init__.py +0 -0
  94. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/jobs/job.py +0 -0
  95. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/jobs/job_result.py +0 -0
  96. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/jobs/types.py +0 -0
  97. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/lfs/__init__.py +0 -0
  98. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/lfs/cache.py +0 -0
  99. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/lfs/utils.py +0 -0
  100. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/runtime/__init__.py +0 -0
  101. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/sdk/__init__.py +0 -0
  102. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/tables.py +0 -0
  103. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/templates/__init__.py +0 -0
  104. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/templates/example_app.py +0 -0
  105. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/typing_utils.py +0 -0
  106. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/user/__init__.py +0 -0
  107. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/user/sign_in.py +0 -0
  108. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/utils/__init__.py +0 -0
  109. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/utils/app_uri.py +0 -0
  110. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/utils/cache_state.py +0 -0
  111. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/utils/multipart_uploader.py +0 -0
  112. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/utils/seq_util.py +0 -0
  113. {pybiolib-1.1.1988 → pybiolib-1.1.1995}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pybiolib
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- Version: 1.1.1988
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+ Version: 1.1.1995
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  Summary: BioLib Python Client
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  Home-page: https://github.com/biolib
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  License: MIT
@@ -99,6 +99,7 @@ class _AppVersionOnJob(TypedDict):
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  class AppOnJob(TypedDict):
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  allow_client_side_execution: bool
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+ can_access_all_data_records_of_user: bool
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  can_push_data_record_for_user: bool
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  state: Literal['public', 'draft']
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@@ -317,6 +317,7 @@ class JobWorker:
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  job_id,
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  ports,
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  can_push_data_record_for_user=app.get('can_push_data_record_for_user', False),
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+ can_access_all_data_records_of_user=app.get('can_access_all_data_records_of_user', False),
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  )
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  remote_host_proxy.start()
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  self._remote_host_proxies.append(remote_host_proxy)
@@ -31,8 +31,10 @@ class RemoteHostProxy:
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  job_id: str,
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  ports: List[int],
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  can_push_data_record_for_user: bool,
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+ can_access_all_data_records_of_user: bool,
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  ):
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  self._can_push_data_record_for_user: bool = can_push_data_record_for_user
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+ self._can_access_all_data_records_of_user: bool = can_access_all_data_records_of_user
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  self.is_app_caller_proxy = remote_host['hostname'] == 'AppCallerProxy'
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  self._remote_host: RemoteHostExtended = RemoteHostExtended(hostname=remote_host['hostname'], ports=ports)
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  self._public_network: Network = public_network
@@ -297,7 +299,14 @@ http {{
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  location /api/lfs/ {{
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  proxy_pass {base_url}/api/lfs/;
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- proxy_set_header authorization {'$bearer_token_on_post_and_get' if self._can_push_data_record_for_user else '""'};
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+ proxy_set_header authorization {'$bearer_token_on_post_and_get' if self._can_push_data_record_for_user else '$bearer_token_on_get' if self._can_access_all_data_records_of_user else '""'};
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+ proxy_set_header cookie "";
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+ proxy_ssl_server_name on;
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+ }}
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+
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+ location /api/app/ {{
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+ proxy_pass {base_url}/api/app/;
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+ proxy_set_header authorization {'$bearer_token_on_get' if self._can_access_all_data_records_of_user else '""'};
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  proxy_set_header cookie "";
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  proxy_ssl_server_name on;
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  }}
@@ -337,7 +346,7 @@ http {{
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  proxy_set_header cookie "";
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  proxy_ssl_server_name on;
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  }}
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- """ if self._can_push_data_record_for_user else ''}
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+ """ if self._can_push_data_record_for_user or self._can_access_all_data_records_of_user else ''}
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  location /proxy/cloud/ {{
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  proxy_pass {cloud_base_url}/proxy/cloud/;
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "pybiolib"
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- version = "1.1.1988"
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+ version = "1.1.1995"
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  description = "BioLib Python Client"
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  readme = "README.md"
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  license = "MIT"
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