pybiolib 1.1.1917__tar.gz → 1.1.1923__tar.gz

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1917
+Version: 1.1.1923
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/biolib/_internal/data_record/data_record.py

@@ -28,6 +28,9 @@ class DataRecord:
 
         self._name = uri_parsed['app_name']
 
+    def __repr__(self):
+        return f'DataRecord: {self._uri}'
+
     @property
     def uri(self) -> str:
         return self._uri
@@ -91,6 +94,8 @@ class DataRecord:
         if uri:
             uri_parsed = parse_app_uri(uri, use_account_as_name_default=False)
             params['account_handle'] = uri_parsed['account_handle_normalized']
+            if uri_parsed['app_name_normalized']:
+                params['app_name'] = uri_parsed['app_name_normalized']
 
         results = api_client.get(path='/apps/', params=params).json()['results']
         if count is None and len(results) == max_page_size:

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/biolib/_internal/runtime.py

@@ -9,6 +9,7 @@ class RuntimeJobDataDict(TypedDict):
     job_requested_machine: str
     job_uuid: str
     job_auth_token: str
+    app_uri: str
 
 
 class BioLibRuntimeError(Exception):
@@ -40,6 +41,10 @@ class Runtime:
     def get_job_requested_machine() -> str:
         return Runtime._get_job_data()['job_requested_machine']
 
+    @staticmethod
+    def get_app_uri() -> str:
+        return Runtime._get_job_data()['app_uri']
+
     @staticmethod
     def set_main_result_prefix(result_prefix: str) -> None:
         job_data = Runtime._get_job_data()

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/biolib/biolib_api_client/job_types.py

@@ -15,6 +15,7 @@ class JobState(Enum):
 
 
 class _Job(TypedDict):
+    app_uri: str
     app_version: AppVersionOnJob
     arguments_override_command: bool
     auth_token: str
@@ -22,10 +23,10 @@ class _Job(TypedDict):
     created_at: str
     federated_job_uuid: Optional[str]
     public_id: str
-    uuid: str
     remote_hosts_with_warning: List[RemoteHost]
     state: str
     user_id: Optional[str]
+    uuid: str
 
 
 # type optional keys with total=False

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/biolib/compute_node/job_worker/executors/docker_executor.py

@@ -275,6 +275,7 @@ class DockerExecutor:
                 job_requested_machine=self._options['job']['requested_machine'],
                 job_uuid=self._options['job']['public_id'],
                 job_auth_token=self._options['job']['auth_token'],
+                app_uri=self._options['job']['app_uri'],
             )
             secrets: Dict[str, str] = dict(
                 **module.get('secrets', {}),

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/biolib/sdk/__init__.py

@@ -1,11 +1,11 @@
 # Imports to hide and use as private internal utils
-from biolib._internal.data_record import DataRecord as _DataRecord
 from biolib._internal.push_application import push_application as _push_application
 from biolib._internal.push_application import set_app_version_as_active as _set_app_version_as_active
 from biolib.app import BioLibApp as _BioLibApp
 from biolib.typing_utils import Optional as _Optional
 
 # Imports to expose as public API
+from biolib._internal.data_record import DataRecord
 from biolib._internal.runtime import Runtime
 
 
@@ -42,5 +42,5 @@ def get_app_version_pytest_plugin(app_version: _BioLibApp):
     return AppVersionFixturePlugin(app_version)
 
 
-def create_data_record(destination: str, data_path: str, name: _Optional[str] = None) -> _DataRecord:
-    return _DataRecord.create(destination, data_path, name)
+def create_data_record(destination: str, data_path: str, name: _Optional[str] = None) -> DataRecord:
+    return DataRecord.create(destination, data_path, name)

{pybiolib-1.1.1917 → pybiolib-1.1.1923}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.1.1917"
+version = "1.1.1923"
 description = "BioLib Python Client"
 readme = "README.md"
 license = "MIT"