pybiolib 1.1.1803__tar.gz → 1.1.1810__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (109) hide show
  1. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/PKG-INFO +1 -1
  2. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/auth.py +10 -2
  3. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/download_container.py +1 -1
  4. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/user/sign_in.py +7 -1
  5. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/pyproject.toml +1 -1
  6. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/LICENSE +0 -0
  7. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/README.md +0 -0
  8. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/__init__.py +0 -0
  9. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/_internal/__init__.py +0 -0
  10. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/_internal/http_client.py +0 -0
  11. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/_internal/push_application.py +0 -0
  12. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/_internal/runtime/__init__.py +0 -0
  13. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/_internal/runtime/job_data.py +0 -0
  14. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/_internal/utils/__init__.py +0 -0
  15. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/api/__init__.py +0 -0
  16. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/api/client.py +0 -0
  17. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/app/__init__.py +0 -0
  18. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/app/app.py +0 -0
  19. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/app/search_apps.py +0 -0
  20. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/__init__.py +0 -0
  21. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/api_client.py +0 -0
  22. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/app_types.py +0 -0
  23. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/auth.py +0 -0
  24. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/biolib_account_api.py +0 -0
  25. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  26. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  27. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/biolib_large_file_system_api.py +0 -0
  28. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/common_types.py +0 -0
  29. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/job_types.py +0 -0
  30. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/lfs_types.py +0 -0
  31. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_api_client/user_state.py +0 -0
  32. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/__init__.py +0 -0
  33. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  34. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/file_in_container.py +0 -0
  35. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/module_input.py +0 -0
  36. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  37. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  38. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  39. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/saved_job.py +0 -0
  40. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  41. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/system_exception.py +0 -0
  42. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/system_status_update.py +0 -0
  43. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_binary_format/utils.py +0 -0
  44. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_docker_client/__init__.py +0 -0
  45. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_download_container.py +0 -0
  46. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_errors.py +0 -0
  47. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/biolib_logging.py +0 -0
  48. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/__init__.py +0 -0
  49. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/init.py +0 -0
  50. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/lfs.py +0 -0
  51. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/push.py +0 -0
  52. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/run.py +0 -0
  53. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/runtime.py +0 -0
  54. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/cli/start.py +0 -0
  55. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/.gitignore +0 -0
  56. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/__init__.py +0 -0
  57. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  58. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  59. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/__init__.py +0 -0
  60. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/cache_state.py +0 -0
  61. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/cache_types.py +0 -0
  62. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  63. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  64. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  65. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  66. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  67. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/executors/types.py +0 -0
  68. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  69. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  70. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/job_storage.py +0 -0
  71. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/job_worker.py +0 -0
  72. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  73. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/mappings.py +0 -0
  74. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  75. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/job_worker/utils.py +0 -0
  76. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/remote_host_proxy.py +0 -0
  77. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/socker_listener_thread.py +0 -0
  78. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/socket_sender_thread.py +0 -0
  79. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/utils.py +0 -0
  80. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/webserver/__init__.py +0 -0
  81. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  82. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/webserver/webserver.py +0 -0
  83. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/webserver/webserver_types.py +0 -0
  84. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  85. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/compute_node/webserver/worker_thread.py +0 -0
  86. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/experiments/__init__.py +0 -0
  87. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/experiments/experiment.py +0 -0
  88. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/experiments/types.py +0 -0
  89. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/jobs/__init__.py +0 -0
  90. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/jobs/job.py +0 -0
  91. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/jobs/job_result.py +0 -0
  92. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/jobs/types.py +0 -0
  93. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/lfs/__init__.py +0 -0
  94. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/lfs/cache.py +0 -0
  95. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/lfs/utils.py +0 -0
  96. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/runtime/__init__.py +0 -0
  97. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/runtime/results.py +0 -0
  98. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/sdk/__init__.py +0 -0
  99. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/tables.py +0 -0
  100. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/templates/__init__.py +0 -0
  101. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/templates/example_app.py +0 -0
  102. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/typing_utils.py +0 -0
  103. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/user/__init__.py +0 -0
  104. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/utils/__init__.py +0 -0
  105. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/utils/app_uri.py +0 -0
  106. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/utils/cache_state.py +0 -0
  107. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/utils/multipart_uploader.py +0 -0
  108. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/utils/seq_util.py +0 -0
  109. {pybiolib-1.1.1803 → pybiolib-1.1.1810}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: pybiolib
3
- Version: 1.1.1803
3
+ Version: 1.1.1810
4
4
  Summary: BioLib Python Client
5
5
  Home-page: https://github.com/biolib
6
6
  License: MIT
@@ -8,10 +8,18 @@ from biolib import biolib_errors, api
8
8
 
9
9
 
10
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  @click.command(help='Login your to BioLib account with web browser')
11
- def login() -> None:
11
+ @click.option(
12
+ '-w',
13
+ is_flag=True,
14
+ default=False,
15
+ required=False,
16
+ type=bool,
17
+ help='Automatically open the login page in the default web browser',
18
+ )
19
+ def login(w: bool) -> None: # pylint: disable=invalid-name
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20
  logger.configure(default_log_level=logging.INFO)
13
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  logger_no_user_data.configure(default_log_level=logging.INFO)
14
- sign_in()
22
+ sign_in(open_in_default_browser=w)
15
23
 
16
24
 
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  @click.command(help='Logout of your BioLib account')
@@ -4,7 +4,7 @@ from biolib.biolib_download_container import download_container_from_uri
4
4
  from biolib.biolib_logging import logger, logger_no_user_data
5
5
 
6
6
 
7
- @click.command(help='Push an application to BioLib', name='download-container')
7
+ @click.command(help='Pull an application from BioLib', name='download-container', hidden=True)
8
8
  @click.argument('uri')
9
9
  def download_container(uri: str) -> None:
10
10
  logger.configure(default_log_level=logging.INFO)
@@ -1,4 +1,6 @@
1
1
  import time
2
+ import webbrowser
3
+
2
4
  from biolib.biolib_api_client import BiolibApiClient
3
5
  from biolib.biolib_api_client.auth import BiolibAuthChallengeApi
4
6
  from biolib.biolib_logging import logger_no_user_data
@@ -11,7 +13,7 @@ def sign_out() -> None:
11
13
  api_client.sign_out()
12
14
 
13
15
 
14
- def sign_in() -> None:
16
+ def sign_in(open_in_default_browser: bool = False) -> None:
15
17
  api_client = BiolibApiClient.get()
16
18
  if api_client.is_signed_in:
17
19
  logger_no_user_data.info('Already signed in')
@@ -28,6 +30,10 @@ def sign_in() -> None:
28
30
  print(f'Opening authorization page at: {frontend_sign_in_url}')
29
31
  print('If your browser does not open automatically, click on the link above.')
30
32
  open_browser_window_from_notebook(frontend_sign_in_url)
33
+ elif open_in_default_browser:
34
+ print(f'Opening authorization page at: {frontend_sign_in_url}')
35
+ print('If your browser does not open automatically, click on the link above.')
36
+ webbrowser.open(frontend_sign_in_url)
31
37
  else:
32
38
  print('Please copy and paste the following link into your browser:')
33
39
  print(frontend_sign_in_url)
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "pybiolib"
3
- version = "1.1.1803"
3
+ version = "1.1.1810"
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  description = "BioLib Python Client"
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5
  readme = "README.md"
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  license = "MIT"
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