pybiolib 1.1.1749__tar.gz → 1.1.1755__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/PKG-INFO +1 -1
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/app_types.py +1 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/job_worker.py +3 -1
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/remote_host_proxy.py +10 -1
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/pyproject.toml +1 -1
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/LICENSE +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/README.md +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/_internal/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/_internal/http_client.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/_internal/push_application.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/api/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/api/client.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/app/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/app/app.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/app/search_apps.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/api_client.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/auth.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/biolib_account_api.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/biolib_app_api.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/biolib_job_api.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/biolib_large_file_system_api.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/common_types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/job_types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/lfs_types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/user_state.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/file_in_container.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/module_input.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/module_output_v2.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/saved_job.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/system_exception.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/system_status_update.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_binary_format/utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_docker_client/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_download_container.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_errors.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_logging.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/download_container.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/init.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/lfs.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/push.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/run.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/runtime.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/cli/start.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/.gitignore +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/cloud_utils/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/cache_state.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/cache_types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/executors/types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/job_storage.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/large_file_system.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/mappings.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/job_worker/utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/socker_listener_thread.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/socket_sender_thread.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/webserver/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/webserver/webserver.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/webserver/webserver_types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/webserver/webserver_utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/compute_node/webserver/worker_thread.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/experiments/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/experiments/experiment.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/experiments/types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/jobs/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/jobs/job.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/jobs/job_result.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/jobs/types.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/lfs/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/lfs/cache.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/lfs/utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/runtime/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/runtime/results.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/sdk/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/tables.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/templates/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/templates/example_app.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/typing_utils.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/user/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/user/sign_in.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/utils/__init__.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/utils/app_uri.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/utils/cache_state.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/utils/multipart_uploader.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/utils/seq_util.py +0 -0
- {pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/utils/zip/remote_zip.py +0 -0
@@ -246,6 +246,7 @@ class JobWorker:
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def _start_network_and_remote_host_proxies(self, job: CreatedJobDict) -> None:
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app_version = job['app_version']
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+
app = app_version.get('app', {})
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job_id = job['public_id']
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remote_hosts = app_version['remote_hosts']
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if utils.IS_RUNNING_IN_CLOUD:
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@@ -307,7 +308,8 @@ class JobWorker:
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self._public_network,
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self._internal_network,
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job_id,
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-
ports
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ports,
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can_push_data_record_for_user=app.get('can_push_data_record_for_user', False),
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)
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remote_host_proxy.start()
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self._remote_host_proxies.append(remote_host_proxy)
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@@ -31,8 +31,10 @@ class RemoteHostProxy:
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public_network: Network,
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internal_network: Optional[Network],
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job_id: str,
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ports: List[int]
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ports: List[int],
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can_push_data_record_for_user: bool,
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):
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self._can_push_data_record_for_user: bool = can_push_data_record_for_user
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self.is_app_caller_proxy = remote_host['hostname'] == 'AppCallerProxy'
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# Default to port 443 for now until backend serves remote_hosts with port specified
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proxy_ssl_server_name on;
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}}
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location /api/lfs/ {{
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proxy_pass {base_url}/api/lfs/;
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proxy_set_header authorization {'$bearer_token_on_post' if self._can_push_data_record_for_user else '""'};
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proxy_set_header cookie "";
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proxy_ssl_server_name on;
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}}
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location /api/ {{
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proxy_pass {base_url}/api/;
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proxy_set_header authorization "";
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{pybiolib-1.1.1749 → pybiolib-1.1.1755}/biolib/biolib_api_client/biolib_large_file_system_api.py
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