pybiolib 1.1.1703__tar.gz → 1.1.1708__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (107) hide show
  1. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/PKG-INFO +1 -1
  2. pybiolib-1.1.1708/biolib/biolib_api_client/biolib_account_api.py +8 -0
  3. pybiolib-1.1.1708/biolib/biolib_api_client/biolib_large_file_system_api.py +34 -0
  4. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/pyproject.toml +1 -1
  5. pybiolib-1.1.1703/biolib/biolib_api_client/biolib_account_api.py +0 -21
  6. pybiolib-1.1.1703/biolib/biolib_api_client/biolib_large_file_system_api.py +0 -53
  7. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/LICENSE +0 -0
  8. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/README.md +0 -0
  9. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/__init__.py +0 -0
  10. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/_internal/__init__.py +0 -0
  11. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/_internal/http_client.py +0 -0
  12. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/_internal/push_application.py +0 -0
  13. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/api/__init__.py +0 -0
  14. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/api/client.py +0 -0
  15. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/app/__init__.py +0 -0
  16. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/app/app.py +0 -0
  17. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/app/search_apps.py +0 -0
  18. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/__init__.py +0 -0
  19. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/api_client.py +0 -0
  20. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/app_types.py +0 -0
  21. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/auth.py +0 -0
  22. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  23. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  24. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/common_types.py +0 -0
  25. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/job_types.py +0 -0
  26. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/lfs_types.py +0 -0
  27. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_api_client/user_state.py +0 -0
  28. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/__init__.py +0 -0
  29. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  30. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/file_in_container.py +0 -0
  31. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/module_input.py +0 -0
  32. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  33. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  34. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  35. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/saved_job.py +0 -0
  36. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  37. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/system_exception.py +0 -0
  38. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/system_status_update.py +0 -0
  39. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_binary_format/utils.py +0 -0
  40. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_docker_client/__init__.py +0 -0
  41. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_download_container.py +0 -0
  42. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_errors.py +0 -0
  43. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/biolib_logging.py +0 -0
  44. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/__init__.py +0 -0
  45. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/download_container.py +0 -0
  46. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/init.py +0 -0
  47. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/lfs.py +0 -0
  48. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/push.py +0 -0
  49. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/run.py +0 -0
  50. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/runtime.py +0 -0
  51. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/cli/start.py +0 -0
  52. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/.gitignore +0 -0
  53. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/__init__.py +0 -0
  54. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  55. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  56. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/__init__.py +0 -0
  57. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/cache_state.py +0 -0
  58. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/cache_types.py +0 -0
  59. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  60. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  61. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  62. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  63. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  64. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/executors/types.py +0 -0
  65. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  66. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  67. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/job_storage.py +0 -0
  68. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/job_worker.py +0 -0
  69. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  70. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/mappings.py +0 -0
  71. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  72. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/job_worker/utils.py +0 -0
  73. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/remote_host_proxy.py +0 -0
  74. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/socker_listener_thread.py +0 -0
  75. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/socket_sender_thread.py +0 -0
  76. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/utils.py +0 -0
  77. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/webserver/__init__.py +0 -0
  78. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  79. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/webserver/webserver.py +0 -0
  80. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/webserver/webserver_types.py +0 -0
  81. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  82. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/compute_node/webserver/worker_thread.py +0 -0
  83. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/experiments/__init__.py +0 -0
  84. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/experiments/experiment.py +0 -0
  85. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/experiments/types.py +0 -0
  86. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/jobs/__init__.py +0 -0
  87. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/jobs/job.py +0 -0
  88. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/jobs/job_result.py +0 -0
  89. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/jobs/types.py +0 -0
  90. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/lfs/__init__.py +0 -0
  91. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/lfs/cache.py +0 -0
  92. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/lfs/utils.py +0 -0
  93. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/runtime/__init__.py +0 -0
  94. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/runtime/results.py +0 -0
  95. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/sdk/__init__.py +0 -0
  96. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/tables.py +0 -0
  97. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/templates/__init__.py +0 -0
  98. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/templates/example_app.py +0 -0
  99. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/typing_utils.py +0 -0
  100. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/user/__init__.py +0 -0
  101. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/user/sign_in.py +0 -0
  102. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/utils/__init__.py +0 -0
  103. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/utils/app_uri.py +0 -0
  104. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/utils/cache_state.py +0 -0
  105. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/utils/multipart_uploader.py +0 -0
  106. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/utils/seq_util.py +0 -0
  107. {pybiolib-1.1.1703 → pybiolib-1.1.1708}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: pybiolib
3
- Version: 1.1.1703
3
+ Version: 1.1.1708
4
4
  Summary: BioLib Python Client
5
5
  Home-page: https://github.com/biolib
6
6
  License: MIT
@@ -0,0 +1,8 @@
1
+ import biolib.api
2
+
3
+ class BiolibAccountApi:
4
+
5
+ @staticmethod
6
+ def fetch_by_handle(account_handle):
7
+ response = biolib.api.client.get(path=f'/api/account/{account_handle}')
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+ return response.json()
@@ -0,0 +1,34 @@
1
+ import biolib.api
2
+ from biolib.biolib_api_client.lfs_types import LargeFileSystemVersion, LargeFileSystem
3
+
4
+
5
+ class BiolibLargeFileSystemApi:
6
+
7
+ @staticmethod
8
+ def create(account_uuid: str, name: str) -> LargeFileSystem:
9
+ response = biolib.api.client.post(
10
+ path='/api/lfs/',
11
+ data={'account_uuid': account_uuid, 'name': name},
12
+ )
13
+
14
+ lfs: LargeFileSystem = response.json()
15
+ return lfs
16
+
17
+ @staticmethod
18
+ def fetch_version(lfs_version_uuid: str) -> LargeFileSystemVersion:
19
+ response = biolib.api.client.get(
20
+ path=f'/api/lfs/versions/{lfs_version_uuid}/',
21
+ )
22
+
23
+ lfs_version: LargeFileSystemVersion = response.json()
24
+ return lfs_version
25
+
26
+ @staticmethod
27
+ def create_version(resource_uuid: str) -> LargeFileSystemVersion:
28
+ response = biolib.api.client.post(
29
+ path='/api/lfs/versions/',
30
+ data={'resource_uuid': resource_uuid},
31
+ )
32
+
33
+ lfs_version: LargeFileSystemVersion = response.json()
34
+ return lfs_version
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "pybiolib"
3
- version = "1.1.1703"
3
+ version = "1.1.1708"
4
4
  description = "BioLib Python Client"
5
5
  readme = "README.md"
6
6
  license = "MIT"
@@ -1,21 +0,0 @@
1
- import requests
2
-
3
- from biolib.biolib_api_client.auth import BearerAuth
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- from biolib.biolib_api_client import BiolibApiClient
5
- from biolib.biolib_errors import BioLibError
6
-
7
-
8
- class BiolibAccountApi:
9
-
10
- @staticmethod
11
- def fetch_by_handle(account_handle):
12
- response = requests.get(
13
- f'{BiolibApiClient.get().base_url}/api/account/{account_handle}',
14
- auth=BearerAuth(BiolibApiClient.get().access_token),
15
- timeout=5
16
- )
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-
18
- if not response.ok:
19
- raise BioLibError(response.content.decode())
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-
21
- return response.json()
@@ -1,53 +0,0 @@
1
- import requests
2
-
3
- from biolib.biolib_api_client.auth import BearerAuth
4
- from biolib.biolib_api_client import BiolibApiClient
5
- from biolib.biolib_api_client.lfs_types import LargeFileSystemVersion, LargeFileSystem
6
- from biolib.biolib_errors import BioLibError
7
-
8
-
9
- class BiolibLargeFileSystemApi:
10
-
11
- @staticmethod
12
- def create(account_uuid: str, name: str) -> LargeFileSystem:
13
- response = requests.post(
14
- f'{BiolibApiClient.get().base_url}/api/lfs/',
15
- auth=BearerAuth(BiolibApiClient.get().access_token),
16
- timeout=5,
17
- json={'account_uuid': account_uuid, 'name': name}
18
- )
19
-
20
- if not response.ok:
21
- raise BioLibError(response.content.decode())
22
-
23
- lfs: LargeFileSystem = response.json()
24
- return lfs
25
-
26
- @staticmethod
27
- def fetch_version(lfs_version_uuid: str) -> LargeFileSystemVersion:
28
- response = requests.get(
29
- f'{BiolibApiClient.get().base_url}/api/lfs/versions/{lfs_version_uuid}/',
30
- auth=BearerAuth(BiolibApiClient.get().access_token),
31
- timeout=5,
32
- )
33
-
34
- if not response.ok:
35
- raise BioLibError(response.content.decode())
36
-
37
- lfs_version: LargeFileSystemVersion = response.json()
38
- return lfs_version
39
-
40
- @staticmethod
41
- def create_version(resource_uuid: str) -> LargeFileSystemVersion:
42
- response = requests.post(
43
- f'{BiolibApiClient.get().base_url}/api/lfs/versions/',
44
- auth=BearerAuth(BiolibApiClient.get().access_token),
45
- json={'resource_uuid': resource_uuid},
46
- timeout=5,
47
- )
48
-
49
- if not response.ok:
50
- raise BioLibError(response.content.decode())
51
-
52
- lfs_version: LargeFileSystemVersion = response.json()
53
- return lfs_version
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