pybiolib 1.1.1691__tar.gz → 1.1.1708__tar.gz

{pybiolib-1.1.1691 → pybiolib-1.1.1708}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1691
+Version: 1.1.1708
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1691 → pybiolib-1.1.1708}/biolib/__init__.py

@@ -1,5 +1,6 @@
 # Imports to hide
 import os
+from urllib.parse import urlparse as _urlparse
 
 from biolib import typing_utils as _typing_utils
 from biolib.app import BioLibApp as _BioLibApp
@@ -77,6 +78,7 @@ def logout() -> None:
 def set_api_base_url(api_base_url: str) -> None:
     _BioLibApiClient.initialize(base_url=api_base_url)
     biolib.utils.BIOLIB_BASE_URL = api_base_url
+    biolib.utils.BIOLIB_SITE_HOSTNAME = _urlparse(api_base_url).hostname
     biolib.utils.BASE_URL_IS_PUBLIC_BIOLIB = api_base_url.endswith('biolib.com') or (
             os.environ.get('BIOLIB_ENVIRONMENT_IS_PUBLIC_BIOLIB', '').upper() == 'TRUE'
     )
@@ -127,4 +129,4 @@ _logger.configure(default_log_level=_DEFAULT_LOG_LEVEL)
 _logger_no_user_data.configure(default_log_level=_DEFAULT_LOG_LEVEL)
 _configure_requests_certificates()
 
-set_api_base_url(biolib.utils.BIOLIB_BASE_URL)
+set_api_base_url(biolib.utils.load_base_url_from_env())

pybiolib-1.1.1708/biolib/biolib_api_client/biolib_account_api.py

@@ -0,0 +1,8 @@
+import biolib.api
+
+class BiolibAccountApi:
+
+    @staticmethod
+    def fetch_by_handle(account_handle):
+        response = biolib.api.client.get(path=f'/api/account/{account_handle}')
+        return response.json()

pybiolib-1.1.1708/biolib/biolib_api_client/biolib_large_file_system_api.py

@@ -0,0 +1,34 @@
+import biolib.api
+from biolib.biolib_api_client.lfs_types import LargeFileSystemVersion, LargeFileSystem
+
+
+class BiolibLargeFileSystemApi:
+
+    @staticmethod
+    def create(account_uuid: str, name: str) -> LargeFileSystem:
+        response = biolib.api.client.post(
+            path='/api/lfs/',
+            data={'account_uuid': account_uuid, 'name': name},
+        )
+
+        lfs: LargeFileSystem = response.json()
+        return lfs
+
+    @staticmethod
+    def fetch_version(lfs_version_uuid: str) -> LargeFileSystemVersion:
+        response = biolib.api.client.get(
+            path=f'/api/lfs/versions/{lfs_version_uuid}/',
+        )
+
+        lfs_version: LargeFileSystemVersion = response.json()
+        return lfs_version
+
+    @staticmethod
+    def create_version(resource_uuid: str) -> LargeFileSystemVersion:
+        response = biolib.api.client.post(
+            path='/api/lfs/versions/',
+            data={'resource_uuid': resource_uuid},
+        )
+
+        lfs_version: LargeFileSystemVersion = response.json()
+        return lfs_version

{pybiolib-1.1.1691 → pybiolib-1.1.1708}/biolib/utils/__init__.py

@@ -4,8 +4,8 @@ import os
 import time
 import socket
 import sys
-from urllib.parse import urlparse
 
+from typing import Optional
 import requests
 from importlib_metadata import version, PackageNotFoundError
 
@@ -25,7 +25,7 @@ except PackageNotFoundError:
 IS_DEV = os.getenv('BIOLIB_DEV', '').upper() == 'TRUE'
 
 
-def _get_base_url() -> str:
+def load_base_url_from_env() -> str:
     base_url = os.getenv('BIOLIB_BASE_URL')
     if base_url:
         return base_url.lower().rstrip('/')
@@ -53,8 +53,8 @@ def _get_base_url() -> str:
     return 'https://biolib.com'
 
 
-BIOLIB_BASE_URL = _get_base_url()
-BIOLIB_SITE_HOSTNAME = urlparse(BIOLIB_BASE_URL).hostname
+BIOLIB_BASE_URL: Optional[str] = None
+BIOLIB_SITE_HOSTNAME: Optional[str] = None
 
 BIOLIB_CLOUD_BASE_URL = os.getenv('BIOLIB_CLOUD_BASE_URL', '').lower()
 
@@ -66,8 +66,7 @@ BIOLIB_SECRETS_TMPFS_PATH = os.environ.get('BIOLIB_SECRETS_TMPFS_PATH')
 
 IS_RUNNING_IN_CLOUD = BIOLIB_CLOUD_ENVIRONMENT == 'non-enclave'
 
-BASE_URL_IS_PUBLIC_BIOLIB = BIOLIB_BASE_URL.endswith('biolib.com') or \
-                            os.environ.get('BIOLIB_ENVIRONMENT_IS_PUBLIC_BIOLIB', '').upper() == 'TRUE'
+BASE_URL_IS_PUBLIC_BIOLIB: Optional[bool] = None
 
 # sys.stdout is an instance of OutStream in Jupyter and Colab which does not have .buffer
 if not hasattr(sys.stdout, 'buffer'):

{pybiolib-1.1.1691 → pybiolib-1.1.1708}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.1.1691"
+version = "1.1.1708"
 description = "BioLib Python Client"
 readme = "README.md"
 license = "MIT"

pybiolib-1.1.1691/biolib/biolib_api_client/biolib_account_api.py

@@ -1,21 +0,0 @@
-import requests
-
-from biolib.biolib_api_client.auth import BearerAuth
-from biolib.biolib_api_client import BiolibApiClient
-from biolib.biolib_errors import BioLibError
-
-
-class BiolibAccountApi:
-
-    @staticmethod
-    def fetch_by_handle(account_handle):
-        response = requests.get(
-            f'{BiolibApiClient.get().base_url}/api/account/{account_handle}',
-            auth=BearerAuth(BiolibApiClient.get().access_token),
-            timeout=5
-        )
-
-        if not response.ok:
-            raise BioLibError(response.content.decode())
-
-        return response.json()

pybiolib-1.1.1691/biolib/biolib_api_client/biolib_large_file_system_api.py

@@ -1,53 +0,0 @@
-import requests
-
-from biolib.biolib_api_client.auth import BearerAuth
-from biolib.biolib_api_client import BiolibApiClient
-from biolib.biolib_api_client.lfs_types import LargeFileSystemVersion, LargeFileSystem
-from biolib.biolib_errors import BioLibError
-
-
-class BiolibLargeFileSystemApi:
-
-    @staticmethod
-    def create(account_uuid: str, name: str) -> LargeFileSystem:
-        response = requests.post(
-            f'{BiolibApiClient.get().base_url}/api/lfs/',
-            auth=BearerAuth(BiolibApiClient.get().access_token),
-            timeout=5,
-            json={'account_uuid': account_uuid, 'name': name}
-        )
-
-        if not response.ok:
-            raise BioLibError(response.content.decode())
-
-        lfs: LargeFileSystem = response.json()
-        return lfs
-
-    @staticmethod
-    def fetch_version(lfs_version_uuid: str) -> LargeFileSystemVersion:
-        response = requests.get(
-            f'{BiolibApiClient.get().base_url}/api/lfs/versions/{lfs_version_uuid}/',
-            auth=BearerAuth(BiolibApiClient.get().access_token),
-            timeout=5,
-        )
-
-        if not response.ok:
-            raise BioLibError(response.content.decode())
-
-        lfs_version: LargeFileSystemVersion = response.json()
-        return lfs_version
-
-    @staticmethod
-    def create_version(resource_uuid: str) -> LargeFileSystemVersion:
-        response = requests.post(
-            f'{BiolibApiClient.get().base_url}/api/lfs/versions/',
-            auth=BearerAuth(BiolibApiClient.get().access_token),
-            json={'resource_uuid': resource_uuid},
-            timeout=5,
-        )
-
-        if not response.ok:
-            raise BioLibError(response.content.decode())
-
-        lfs_version: LargeFileSystemVersion = response.json()
-        return lfs_version