pyatoa 0.4.2__tar.gz → 0.4.3__tar.gz

{pyatoa-0.4.2 → pyatoa-0.4.3}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: pyatoa
-Version: 0.4.2
+Version: 0.4.3
 Summary: Python's Adjoint Tomography Operations Assistant
 Author: adjTomo Dev Team
 Author-email: adjtomo@gmail.com
@@ -699,6 +699,7 @@ Provides-Extra: dev
 Requires-Dist: pytest; extra == "dev"
 Requires-Dist: ipython; extra == "dev"
 Requires-Dist: ipdb; extra == "dev"
+Dynamic: license-file
 
 # Python's Adjoint Tomography Operations Assistant  
 

{pyatoa-0.4.2 → pyatoa-0.4.3}/pyatoa/utils/process.py

@@ -201,11 +201,19 @@ def trim_streams(st_a, st_b, force=None):
             elif dt >= tr.stats.delta:
                 logger.warning(f"{tr.id} starttime is {dt}s greater than delta")
 
+    # Last check to ensure start and endtime match within sampling rate
     for tr_a, tr_b in zip(st_a_out, st_b_out):
-        assert(tr_a.stats.starttime == tr_b.stats.starttime), \
-            "unable to trim streams and match starttimes"
-        assert(tr_a.stats.endtime == tr_b.stats.endtime), \
-            "unable to trim streams and match endtimes"
+        start_diff = np.abs(tr_a.stats.starttime - tr_b.stats.starttime)
+        assert(start_diff < tr_a.stats.sampling_rate), (
+            f"starttimes do not match after trim operation "
+            f"a:{tr_a.stats.starttime} / b:{tr_b.stats.starttime}"
+            )
+
+        end_diff = np.abs(tr_a.stats.endtime - tr_b.stats.endtime)
+        assert(end_diff < tr_a.stats.sampling_rate), (
+            f"endtimes do not match after trim operation "
+            f"a:{tr_a.stats.endtime} / b:{tr_b.stats.endtime}"
+            )
 
     return st_a_out, st_b_out
 

{pyatoa-0.4.2 → pyatoa-0.4.3}/pyatoa.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: pyatoa
-Version: 0.4.2
+Version: 0.4.3
 Summary: Python's Adjoint Tomography Operations Assistant
 Author: adjTomo Dev Team
 Author-email: adjtomo@gmail.com
@@ -699,6 +699,7 @@ Provides-Extra: dev
 Requires-Dist: pytest; extra == "dev"
 Requires-Dist: ipython; extra == "dev"
 Requires-Dist: ipdb; extra == "dev"
+Dynamic: license-file
 
 # Python's Adjoint Tomography Operations Assistant  
 

{pyatoa-0.4.2 → pyatoa-0.4.3}/pyatoa.egg-info/SOURCES.txt

@@ -1,8 +1,6 @@
 LICENSE.txt
 README.md
 pyproject.toml
-docs/__init__.py
-docs/conf.py
 pyatoa/__init__.py
 pyatoa.egg-info/PKG-INFO
 pyatoa.egg-info/SOURCES.txt

{pyatoa-0.4.2 → pyatoa-0.4.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "pyatoa"
-version = "0.4.2"
+version = "0.4.3"
 description = "Python's Adjoint Tomography Operations Assistant"
 readme = "README.md"
 requires-python = ">=3.7"

pyatoa-0.4.2/docs/conf.py

@@ -1,215 +0,0 @@
-# -*- coding: utf-8 -*-
-#
-# Configuration file for the Sphinx documentation builder.
-#
-# This file does only contain a selection of the most common options. For a
-# full list see the documentation:
-# http://www.sphinx-doc.org/en/master/config
-
-# -- Path setup --------------------------------------------------------------
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-import os
-import sys
-sys.path.insert(0, os.path.abspath('..'))
-
-import sphinx_rtd_theme
-    
-# -- Project information -----------------------------------------------------
-
-project = 'Pyatoa'
-copyright = '2024, adjTomo'
-author = 'adjTomo Dev Team'
-
-# The short X.Y version
-# Grab version number from 'pyproject.toml'
-with open("../pyproject.toml", "r") as f:
-    _lines = f.readlines()
-for _line in _lines:
-    if _line.startswith("version"):
-        version = _line.split('"')[1].strip()
-
-# The full version, including alpha/beta/rc tags
-release = ''
-
-
-# -- General configuration ---------------------------------------------------
-
-# If your documentation needs a minimal Sphinx version, state it here.
-#
-# needs_sphinx = '1.0'
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = [
-    'sphinx.ext.doctest',
-    'sphinx.ext.intersphinx',
-    'sphinx.ext.todo',
-    'sphinx.ext.coverage',
-    'sphinx.ext.viewcode',
-    'sphinx.ext.napoleon',
-    'sphinx.ext.autosummary',
-    'sphinx_rtd_theme',
-    'autoapi.extension',
-    'nbsphinx',
-    'myst_parser'
-]
-
-# Need to tell the autoapi that our source code is one level up
-autoapi_type = "python"
-autoapi_dirs = ["../pyatoa"]
-autoapi_add_toctree_entry = True
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The suffix(es) of source filenames.
-# You can specify multiple suffix as a list of string:
-#
-source_suffix = {'.rst': 'restructuredtext', 
-                 '.md': 'markdown'}
-
-# The master toctree document.
-master_doc = 'index'
-
-# The language for content autogenerated by Sphinx. Refer to documentation
-# for a list of supported languages.
-#
-# This is also used if you do content translation via gettext catalogs.
-# Usually you set "language" from the command line for these cases.
-language = "en"
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', '.ipynb']
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = None
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-# html_theme = 'alabaster'
-html_theme = 'sphinx_rtd_theme'
-
-# Extra HTML options
-html_favicon = 'images/pyatoa_favicon.png'
-html_logo = 'images/pyatoa_inline_text_bigO.png'
-
-# Theme options are theme-specific and customize the look and feel of a theme
-# further.  For a list of options available for each theme, see the
-# documentation.
-#
-# html_theme_options = {}
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-# html_static_path = ['_static']
-html_static_path = []
-
-# Custom sidebar templates, must be a dictionary that maps document names
-# to template names.
-#
-# The default sidebars (for documents that don't match any pattern) are
-# defined by theme itself.  Builtin themes are using these templates by
-# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
-# 'searchbox.html']``.
-#
-# html_sidebars = {}
-
-
-# -- Options for HTMLHelp output ---------------------------------------------
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = 'Pyatoadoc'
-
-
-# -- Options for LaTeX output ------------------------------------------------
-
-latex_elements = {
-    # The paper size ('letterpaper' or 'a4paper').
-    #
-    # 'papersize': 'letterpaper',
-
-    # The font size ('10pt', '11pt' or '12pt').
-    #
-    # 'pointsize': '10pt',
-
-    # Additional stuff for the LaTeX preamble.
-    #
-    # 'preamble': '',
-
-    # Latex figure (float) alignment
-    #
-    # 'figure_align': 'htbp',
-}
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title,
-#  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (master_doc, 'Pyatoa.tex', 'Pyatoa Documentation',
-     'Bryant Chow', 'manual'),
-]
-
-
-# -- Options for manual page output ------------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [
-    (master_doc, 'pyatoa', 'Pyatoa Documentation',
-     [author], 1)
-]
-
-
-# -- Options for Texinfo output ----------------------------------------------
-
-# Grouping the document tree into Texinfo files. List of tuples
-# (source start file, target name, title, author,
-#  dir menu entry, description, category)
-texinfo_documents = [
-    (master_doc, 'Pyatoa', 'Pyatoa Documentation',
-     author, 'Pyatoa', 'Pythons Adjoint Tomography Operations Assistant',
-     'Miscellaneous'),
-]
-
-
-# -- Options for Epub output -------------------------------------------------
-
-# Bibliographic Dublin Core info.
-epub_title = project
-
-# The unique identifier of the text. This can be a ISBN number
-# or the project homepage.
-#
-# epub_identifier = ''
-
-# A unique identification for the text.
-#
-# epub_uid = ''
-
-# A list of files that should not be packed into the epub file.
-epub_exclude_files = ['search.html']
-
-
-# -- Extension configuration -------------------------------------------------
-
-# -- Options for intersphinx extension ---------------------------------------
-
-# Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {'https://docs.python.org/': None}
-
-# -- Options for todo extension ----------------------------------------------
-
-# If true, `todo` and `todoList` produce output, else they produce nothing.
-todo_include_todos = True