pyadps 0.2.0b0__tar.gz → 0.3.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pyadps-0.2.0b0 → pyadps-0.3.0}/PKG-INFO +63 -33
- {pyadps-0.2.0b0 → pyadps-0.3.0}/README.md +51 -20
- pyadps-0.3.0/pyproject.toml +46 -0
- pyadps-0.3.0/src/pyadps/Home_Page.py +48 -0
- pyadps-0.3.0/src/pyadps/pages/01_Read_File.py +698 -0
- pyadps-0.3.0/src/pyadps/pages/02_View_Raw_Data.py +184 -0
- pyadps-0.3.0/src/pyadps/pages/03_Download_Raw_File.py +380 -0
- pyadps-0.3.0/src/pyadps/pages/04_Sensor_Health.py +905 -0
- pyadps-0.3.0/src/pyadps/pages/05_QC_Test.py +493 -0
- pyadps-0.3.0/src/pyadps/pages/06_Profile_Test.py +971 -0
- pyadps-0.3.0/src/pyadps/pages/07_Velocity_Test.py +600 -0
- pyadps-0.3.0/src/pyadps/pages/08_Write_File.py +623 -0
- pyadps-0.3.0/src/pyadps/pages/09_Add-Ons.py +168 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/utils/__init__.py +5 -3
- pyadps-0.3.0/src/pyadps/utils/autoprocess.py +573 -0
- pyadps-0.3.0/src/pyadps/utils/logging_utils.py +269 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/utils/metadata/config.ini +22 -4
- pyadps-0.3.0/src/pyadps/utils/metadata/demo.000 +0 -0
- pyadps-0.3.0/src/pyadps/utils/metadata/flmeta.json +422 -0
- pyadps-0.3.0/src/pyadps/utils/metadata/vlmeta.json +613 -0
- pyadps-0.3.0/src/pyadps/utils/multifile.py +292 -0
- pyadps-0.2.0b0/src/pyadps/utils/cutbin.py → pyadps-0.3.0/src/pyadps/utils/plotgen.py +332 -14
- pyadps-0.3.0/src/pyadps/utils/profile_test.py +782 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/utils/pyreadrdi.py +164 -92
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/utils/readrdi.py +436 -186
- pyadps-0.3.0/src/pyadps/utils/script.py +205 -0
- pyadps-0.3.0/src/pyadps/utils/sensor_health.py +120 -0
- pyadps-0.3.0/src/pyadps/utils/signal_quality.py +539 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/utils/velocity_test.py +79 -31
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/utils/writenc.py +222 -39
- pyadps-0.2.0b0/pyproject.toml +0 -45
- pyadps-0.2.0b0/src/pyadps/Home_Page.py +0 -42
- pyadps-0.2.0b0/src/pyadps/pages/01_Read_File.py +0 -286
- pyadps-0.2.0b0/src/pyadps/pages/02_View_Raw_Data.py +0 -128
- pyadps-0.2.0b0/src/pyadps/pages/03_Download_Raw_File.py +0 -247
- pyadps-0.2.0b0/src/pyadps/pages/04_QC_Test.py +0 -334
- pyadps-0.2.0b0/src/pyadps/pages/05_Profile_Test.py +0 -575
- pyadps-0.2.0b0/src/pyadps/pages/06_Velocity_Test.py +0 -341
- pyadps-0.2.0b0/src/pyadps/pages/07_Write_File.py +0 -452
- pyadps-0.2.0b0/src/pyadps/utils/autoprocess.py +0 -282
- pyadps-0.2.0b0/src/pyadps/utils/metadata/flmeta.json +0 -422
- pyadps-0.2.0b0/src/pyadps/utils/metadata/vlmeta.json +0 -567
- pyadps-0.2.0b0/src/pyadps/utils/plotgen.py +0 -229
- pyadps-0.2.0b0/src/pyadps/utils/profile_test.py +0 -187
- pyadps-0.2.0b0/src/pyadps/utils/regrid.py +0 -279
- pyadps-0.2.0b0/src/pyadps/utils/script.py +0 -155
- pyadps-0.2.0b0/src/pyadps/utils/signal_quality.py +0 -135
- {pyadps-0.2.0b0 → pyadps-0.3.0}/LICENSE +0 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/__init__.py +0 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/__main__.py +0 -0
- {pyadps-0.2.0b0 → pyadps-0.3.0}/src/pyadps/pages/__init__.py +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.3
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Name: pyadps
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Version: 0.
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Version: 0.3.0
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Summary: A Python package for ADCP data processing
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Home-page: https://example.com
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License: MIT
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Keywords: adcp,data-processing,oceanography
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Author: P. Amol
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Provides-Extra: tests
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Requires-Dist: cmake (>=3.30.2)
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Requires-Dist: matplotlib (>=3.8.4)
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Requires-Dist: matplotlib (>=3.8.4,<3.9.0)
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Requires-Dist: meson (>=1.4.1)
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Project-URL: Documentation, https://
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Requires-Dist: netCDF4 (>=1.7.1,<1.8.0)
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Requires-Dist: numpy (>=1.26.4,<1.27.0)
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Requires-Dist: pandas (>=2.2.2,<2.3.0)
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Requires-Dist: plotly (>=5.22.0,<5.23.0)
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Requires-Dist: plotly-resampler (>=0.10.0,<0.11.0)
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Requires-Dist: pygeomag (>=1.1.0,<2.0.0)
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Requires-Dist: scipy (>=1.14.0,<1.15.0)
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Requires-Dist: streamlit (>=1.36.0,<1.37.0)
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Project-URL: Documentation, https://pyadps.readthedocs.io/en/latest/index.html
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Project-URL: Repository, https://github.com/p-amol/pyadps
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Project-URL: homepage, https://pyadps.readthedocs.io/en/latest/index.html
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Description-Content-Type: text/markdown
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# pyadps
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`pyadps` is a Python package for processing moored Acoustic Doppler
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`pyadps` is a Python package for processing moored Acoustic Doppler
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Current Profiler (ADCP) data. It provides various functionalities
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such as data reading, quality control tests, NetCDF file creation,
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and visualization.
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This software offers both a graphical interface (`Streamlit`) for
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This software offers both a graphical interface (`Streamlit`) for
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those new to Python and direct Python package access for experienced
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users. Please note that `pyadps` is primarily designed for Teledyne
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RDI workhorse ADCPs. Other company's ADCP files are not compatible,
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and while some other RDI models may work, they might require additional
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considerations.
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- Documentation: <https://pyadps.readthedocs.io>
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- Source code: <https://github.com/p-amol/pyadps>
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- Bug reports: <https://github.com/p-amol/pyadps/issues>
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## Table of Contents
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## Installation
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We recommend installing the package within a virtual environment.
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We recommend installing the package within a virtual environment.
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At present, the package is compatible exclusively with Python version 3.12.
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You can create a Python environment using tools like `venv` or `conda`.
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Below are instructions for both methods.
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### 1. Using `venv` (Built-in Python Tool)
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#### Step 1: Install Python version 3.12 (if not already installed)
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Ensure you have Python installed. You can download the latest version from [python.org](https://www.python.org/downloads/).
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#### Step 2: Create a Virtual Environment
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#### Step 2: Create a Virtual Environment
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- Open your terminal or command prompt.
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- Navigate to your project folder:
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```bash
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cd /path/to/your/project
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```
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- Run the following command to create a virtual environment
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(replace adpsenv with your preferred environment name):
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```bash
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python -m venv adpsenv
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```
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#### Step 3: Activate the Environment
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```bash
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adpsenv\Scripts\activate
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```
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```bash
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source adpsenv/bin/activate
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```
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You’ll see the environment name in your terminal prompt
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indicating the environment is active.
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#### Step 4: Install Dependencies
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```
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#### Step 5: Deactivate the Environment
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When you’re done working in the environment, deactivate it by running:
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deactivate
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### 2. Using `conda` (Anaconda/Miniconda)
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First, you need to have Conda installed on your system. You can either install:
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- [Anaconda (Full Distribution)](https://www.anaconda.com/products/individual)
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- [Miniconda (Lightweight Version)](https://docs.conda.io/en/latest/miniconda.html)
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```bash
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conda create --name adpsenv python=3.12
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```
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#### Step 3: Activate the Conda Environment
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conda activate adpsenv
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```
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#### Step 4: Install Dependencies
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#### Step 4: Install pyadps Dependencies
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You can install packages with pip inside Conda environments.
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```bash
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pip install pyadps
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```
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conda deactivate
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```
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### Streamlit web interface
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Open a terminal or command prompt, activate the environment, and run the command.
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run-pyadps
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```
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## License
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This project is licensed under the MIT License. See the LICENSE file for details.
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# pyadps
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`pyadps` is a Python package for processing moored Acoustic Doppler
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`pyadps` is a Python package for processing moored Acoustic Doppler
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Current Profiler (ADCP) data. It provides various functionalities
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such as data reading, quality control tests, NetCDF file creation,
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and visualization.
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This software offers both a graphical interface (`Streamlit`) for
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those new to Python and direct Python package access for experienced
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users. Please note that `pyadps` is primarily designed for Teledyne
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RDI workhorse ADCPs. Other company's ADCP files are not compatible,
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and while some other RDI models may work, they might require additional
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considerations.
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- Documentation: <https://pyadps.readthedocs.io>
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- Source code: <https://github.com/p-amol/pyadps>
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- Bug reports: <https://github.com/p-amol/pyadps/issues>
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## Table of Contents
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## Installation
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We recommend installing the package within a virtual environment.
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We recommend installing the package within a virtual environment.
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At present, the package is compatible exclusively with Python version 3.12.
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You can create a Python environment using tools like `venv` or `conda`.
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Below are instructions for both methods.
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### 1. Using `venv` (Built-in Python Tool)
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#### Step 1: Install Python version 3.12 (if not already installed)
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Ensure you have Python installed. You can download the latest version from [python.org](https://www.python.org/downloads/).
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#### Step 2: Create a Virtual Environment
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#### Step 2: Create a Virtual Environment
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- Open your terminal or command prompt.
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```bash
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cd /path/to/your/project
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```
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(replace adpsenv with your preferred environment name):
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```bash
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python -m venv adpsenv
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```
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#### Step 3: Activate the Environment
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```bash
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adpsenv\Scripts\activate
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```
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```bash
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source adpsenv/bin/activate
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```
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indicating the environment is active.
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#### Step 4: Install Dependencies
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```
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#### Step 5: Deactivate the Environment
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deactivate
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```
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### 2. Using `conda` (Anaconda/Miniconda)
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#### Step 1: Install Conda
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First, you need to have Conda installed on your system. You can either install:
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- [Anaconda (Full Distribution)](https://www.anaconda.com/products/individual)
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- [Miniconda (Lightweight Version)](https://docs.conda.io/en/latest/miniconda.html)
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#### Step 2: Create a Conda Environment with Python 3.12
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your preferred environment name):
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conda activate adpsenv
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```
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#### Step 4: Install Dependencies
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#### Step 4: Install pyadps Dependencies
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You can install packages with pip inside Conda environments.
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```bash
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pip install pyadps
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```
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#### Step 5: Deactivate the Environment
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#### Step 5: Deactivate the Conda Environment
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When done working in the environment, deactivate the environment by running:
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```bash
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conda deactivate
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```
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@@ -99,11 +130,11 @@ conda deactivate
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### Streamlit web interface
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Open a terminal or command prompt, activate the environment, and run the command.
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```bash
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run-pyadps
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```
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## License
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This project is licensed under the MIT License. See the LICENSE file for details.
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@@ -0,0 +1,46 @@
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1
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[tool.poetry]
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name = "pyadps"
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version = "0.3.0"
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description = "A Python package for ADCP data processing"
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authors = ["P. Amol <prakashamol@gmail.com>"]
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readme = "README.md"
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license = "MIT"
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keywords = ["adcp", "data-processing", "oceanography"]
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include = ["utils/metadata/*.json"]
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classifiers = [
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"Programming Language :: Python :: 3",
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"License :: OSI Approved :: MIT License",
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"Operating System :: OS Independent",
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]
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+
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[tool.poetry.urls]
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homepage = "https://pyadps.readthedocs.io/en/latest/index.html"
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Documentation = "https://pyadps.readthedocs.io/en/latest/index.html"
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Repository = "https://github.com/p-amol/pyadps"
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+
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[tool.poetry.dependencies]
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python = "<4.0.0,>=3.12"
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streamlit = "~=1.36.0"
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+
numpy = "~=1.26.4"
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+
matplotlib = "~=3.8.4"
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+
scipy = "~=1.14.0"
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+
cmake = ">=3.30.2"
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+
pandas = "~=2.2.2"
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+
netCDF4 = "~=1.7.1"
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+
plotly = "~=5.22.0"
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+
plotly-resampler = "~=0.10.0"
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+
meson = ">=1.4.1"
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+
pygeomag = "^1.1.0"
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+
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+
[tool.poetry.group.dev.dependencies]
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+
pytest = "^7.4"
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ruff = "^0.5.0"
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+
|
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+
[tool.poetry.scripts]
|
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|
+
run-pyadps = "pyadps.__main__:main"
|
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+
run-auto = "pyadps.utils.autoprocess:main"
|
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+
run-script = "pyadps.utils.script:main"
|
43
|
+
|
44
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+
[build-system]
|
45
|
+
requires = ["poetry-core>=1.0.0"]
|
46
|
+
build-backend = "poetry.core.masonry.api"
|
@@ -0,0 +1,48 @@
|
|
1
|
+
import streamlit as st
|
2
|
+
|
3
|
+
|
4
|
+
def main():
|
5
|
+
st.set_page_config(
|
6
|
+
page_title="ADCP Data Processing Software",
|
7
|
+
page_icon=":world_map:️",
|
8
|
+
layout="wide",
|
9
|
+
initial_sidebar_state="auto",
|
10
|
+
menu_items={
|
11
|
+
"Get Help": "https://github.com/p-amol/pyadps",
|
12
|
+
"Report a bug": "https://github.com/p-amol/pyadps/issues",
|
13
|
+
"About": "# Python ADCP Data Processing Software (PyADPS)",
|
14
|
+
},
|
15
|
+
)
|
16
|
+
|
17
|
+
"""
|
18
|
+
# **Python ADCP Data Processing Software (pyadps)**
|
19
|
+
|
20
|
+
`pyadps` is a Python package for processing moored Acoustic Doppler Current Profiler (ADCP) data. It provides various functionalities such as data reading, quality control tests, NetCDF file creation, and visualization.
|
21
|
+
|
22
|
+
This software offers both a graphical interface (Streamlit) for those new to Python and direct Python package access for experienced users. Please note that pyadps is primarily designed for Teledyne RDI workhorse ADCPs. Other company's ADCP files are not compatible, and while some other RDI models may work, they might require additional considerations.
|
23
|
+
|
24
|
+
* Documentation: https://pyadps.readthedocs.io
|
25
|
+
* Source code: https://github.com/p-amol/pyadps
|
26
|
+
* Bug reports: https://github.com/p-amol/pyadps/issues
|
27
|
+
## Features
|
28
|
+
|
29
|
+
* Access RDI ADCP binary files using Python 3
|
30
|
+
* Convert RDI binary files to netcdf
|
31
|
+
* Process ADCP data
|
32
|
+
|
33
|
+
## Contribute
|
34
|
+
Issue Tracker: https://github.com/p-amol/pyadps/issues
|
35
|
+
Source Code: https://github.com/p-amol/pyadps
|
36
|
+
|
37
|
+
## Support
|
38
|
+
If you are having issues, please let us know.
|
39
|
+
We have a mailing list located at: adps-python@google-groups.com
|
40
|
+
|
41
|
+
## License
|
42
|
+
The project is licensed under the MIT license.
|
43
|
+
|
44
|
+
"""
|
45
|
+
|
46
|
+
|
47
|
+
if __name__ == "__main__":
|
48
|
+
main()
|