pyVertexModel 1.0.3.dev0__tar.gz → 1.0.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (115) hide show
  1. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.github/workflows/python-publish.yml +2 -2
  2. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.gitignore +2 -0
  3. pyvertexmodel-1.0.4/Input/wing_disc_150.mat +0 -0
  4. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/PKG-INFO +1 -1
  5. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/PKG-INFO +1 -1
  6. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/SOURCES.txt +2 -13
  7. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kg_functions.c +387 -397
  8. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/_version.py +3 -3
  9. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.gitattributes +0 -0
  10. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  11. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  12. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.github/workflows/tests.yaml +0 -0
  13. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.idea/.gitignore +0 -0
  14. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.idea/inspectionProfiles/profiles_settings.xml +0 -0
  15. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.idea/modules.xml +0 -0
  16. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.idea/other.xml +0 -0
  17. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.idea/pyVertexModel.iml +0 -0
  18. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.idea/vcs.xml +0 -0
  19. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.python-version +0 -0
  20. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.run/analyse_simulations.run.xml +0 -0
  21. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/CODE_OF_CONDUCT.md +0 -0
  22. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/LICENSE +0 -0
  23. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/README.md +0 -0
  24. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/SECURITY.md +0 -0
  25. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/__init__.py +0 -0
  26. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_cell.py +0 -0
  27. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_degreesOfFreedom.py +0 -0
  28. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_face.py +0 -0
  29. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_flip.py +0 -0
  30. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_geo.py +0 -0
  31. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_kg.py +0 -0
  32. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_newtonRaphson.py +0 -0
  33. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_remodelling.py +0 -0
  34. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_tris.py +0 -0
  35. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_utils.py +0 -0
  36. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/test_vertexModel.py +0 -0
  37. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/Tests/tests.py +0 -0
  38. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/logo.png +0 -0
  39. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel/__init__.py +0 -0
  40. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel/napari.yaml +0 -0
  41. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/dependency_links.txt +0 -0
  42. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/not-zip-safe +0 -0
  43. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/requires.txt +0 -0
  44. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/top_level.txt +0 -0
  45. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyproject.toml +0 -0
  46. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/report.md +0 -0
  47. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/requirements.txt +0 -0
  48. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/resources/LblImg_imageSequence.mat +0 -0
  49. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/setup.cfg +0 -0
  50. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/setup.py +0 -0
  51. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/__init__.py +0 -0
  52. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/hpc_run.sh +0 -0
  53. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/main.sh +0 -0
  54. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/main_cell_shapes.sh +0 -0
  55. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/main_generic.sh +0 -0
  56. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/parallel_find_ps.sh +0 -0
  57. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/parallel_run.sh +0 -0
  58. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/__init__.py +0 -0
  59. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kg.py +0 -0
  60. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgContractility.py +0 -0
  61. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgContractility_external.py +0 -0
  62. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgSubstrate.py +0 -0
  63. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgSurfaceCellBasedAdhesion.py +0 -0
  64. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgTriAREnergyBarrier.py +0 -0
  65. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgTriEnergyBarrier.py +0 -0
  66. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgViscosity.py +0 -0
  67. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kgVolume.py +0 -0
  68. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/Kg/kg_functions.pyx +0 -0
  69. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/__init__.py +0 -0
  70. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/algorithm/VertexModelVoronoi3D.py +0 -0
  71. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/algorithm/__init__.py +0 -0
  72. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/algorithm/newtonRaphson.py +0 -0
  73. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/algorithm/vertexModel.py +0 -0
  74. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/algorithm/vertexModelBubbles.py +0 -0
  75. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/algorithm/vertexModelVoronoiFromTimeImage.py +0 -0
  76. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/__init__.py +0 -0
  77. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analyse_in_vivo_ablation_data.py +0 -0
  78. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analyse_optuna_results.py +0 -0
  79. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analyse_pre_ablation_state.py +0 -0
  80. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analyse_results_excel.py +0 -0
  81. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analyse_simulation.py +0 -0
  82. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analyse_simulations.py +0 -0
  83. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analysis_megha.py +0 -0
  84. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/analysis_space_exploration.py +0 -0
  85. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/average_noise_files.py +0 -0
  86. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/display_different_models_in_one_figure.py +0 -0
  87. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/find_required_purse_string.py +0 -0
  88. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/get_same_feature_ablation.py +0 -0
  89. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/obtain_best_parameters.py +0 -0
  90. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/obtain_vtks_from_file.py +0 -0
  91. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/analysis/plot_parameters_based_on_height.py +0 -0
  92. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/geometry/__init__.py +0 -0
  93. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/geometry/cell.py +0 -0
  94. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/geometry/degreesOfFreedom.py +0 -0
  95. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/geometry/face.py +0 -0
  96. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/geometry/geo.py +0 -0
  97. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/geometry/tris.py +0 -0
  98. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/gui/__init__.py +0 -0
  99. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/gui/qt_gui.py +0 -0
  100. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/main.py +0 -0
  101. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/main_bubbles.py +0 -0
  102. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/main_different_cell_shapes.py +0 -0
  103. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/main_optuna.py +0 -0
  104. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/main_paper_simulations.py +0 -0
  105. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/mesh_remodelling/__init__.py +0 -0
  106. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/mesh_remodelling/flip.py +0 -0
  107. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/mesh_remodelling/remodelling.py +0 -0
  108. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/parameters/__init__.py +0 -0
  109. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/parameters/set.py +0 -0
  110. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/util/__init__.py +0 -0
  111. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/util/add_to_pythonpath.sh +0 -0
  112. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/util/space_exploration.py +0 -0
  113. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/pyVertexModel/util/utils.py +0 -0
  114. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/src/run.bat +0 -0
  115. {pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/uv.lock +0 -0
{pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.github/workflows/python-publish.yml RENAMED
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  - name: Build release distributions
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- python -m pip install build
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+ python -m pip install --upgrade pip build twine setuptools setuptools-scm
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+ python -m build --sdist -o dist
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  - name: Upload distributions
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  uses: actions/upload-artifact@v4
{pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/.gitignore RENAMED
@@ -192,3 +192,5 @@ data/
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  Input
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  *.xlsx
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+ src/pyVertexModel/_version.py
{pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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- Version: 1.0.3.dev0
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+ Version: 1.0.4
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  License-File: LICENSE
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{pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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- Version: 1.0.3.dev0
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{pyvertexmodel-1.0.3.dev0 → pyvertexmodel-1.0.4}/pyVertexModel.egg-info/SOURCES.txt RENAMED
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  .idea/vcs.xml
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  .idea/inspectionProfiles/profiles_settings.xml
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  .run/analyse_simulations.run.xml
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+ Input/wing_disc_150.mat
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  Tests/__init__.py
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  src/pyVertexModel/util/space_exploration.py
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- src/pyVertexModel/util/utils.py
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- tests/test_cell.py
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- tests/test_degreesOfFreedom.py
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- tests/test_face.py
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- tests/test_flip.py
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- tests/test_geo.py
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- tests/test_kg.py
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- tests/test_newtonRaphson.py
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- tests/test_remodelling.py
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- tests/test_tris.py
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- tests/test_utils.py
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- tests/test_vertexModel.py
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- tests/tests.py
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+ src/pyVertexModel/util/utils.py