pyLoopSage 1.0.3__tar.gz → 1.0.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (22) hide show
  1. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/PKG-INFO +1 -1
  2. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/__init__.py +1 -1
  3. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/run.py +2 -2
  4. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/PKG-INFO +1 -1
  5. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/setup.py +1 -1
  6. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/LICENSE +0 -0
  7. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/README.md +0 -0
  8. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/args_definition.py +0 -0
  9. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/em.py +0 -0
  10. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/initial_structures.py +0 -0
  11. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/md.py +0 -0
  12. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/plots.py +0 -0
  13. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/preproc.py +0 -0
  14. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/stochastic_simulation.py +0 -0
  15. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/utils.py +0 -0
  16. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/vizualization_tools.py +0 -0
  17. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/SOURCES.txt +0 -0
  18. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/dependency_links.txt +0 -0
  19. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/entry_points.txt +0 -0
  20. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/requires.txt +0 -0
  21. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/top_level.txt +0 -0
  22. {pyloopsage-1.0.3 → pyloopsage-1.0.4}/setup.cfg +0 -0
{pyloopsage-1.0.3 → pyloopsage-1.0.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pyLoopSage
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- Version: 1.0.3
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+ Version: 1.0.4
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  Summary: An energy-based stochastic model of loop extrusion in chromatin.
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  Home-page: https://github.com/SFGLab/pyLoopSage
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  Author: Sebastian Korsak
{pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/__init__.py RENAMED
@@ -1,4 +1,4 @@
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  # Importing specific functions or classes from submodules
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  from .run import main
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- __version__ = "1.0.3"
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+ __version__ = "1.0.4"
{pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/run.py RENAMED
@@ -74,11 +74,11 @@ def main():
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  if args.SIMULATION_TYPE=='EM':
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  sim.run_EM(args.PLATFORM,args.ANGLE_FF_STRENGTH,args.LE_FF_LENGTH,args.LE_FF_STRENGTH,args.EV_FF_STRENGTH,args.TOLERANCE)
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  elif args.SIMULATION_TYPE=='MD':
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- sim.run_MD(args.PLATFORM,args.ANGLE_FF_STRENGTH,args.LE_FF_LENGTH,args.LE_FF_STRENGTH,args.EV_FF_STRENGTH,args.TOLERANCE,args.SIM)
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+ sim.run_MD(args.PLATFORM,args.ANGLE_FF_STRENGTH,args.LE_FF_LENGTH,args.LE_FF_STRENGTH,args.EV_FF_STRENGTH,args.TOLERANCE,args.SIM_STEP)
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  elif args.SIMULATION_TYPE==None:
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  print('\n3D simulation did not run because it was not specified. Please specify argument SIMULATION_TYPE as EM or MD.')
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  else:
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  IndentationError('Uknown simulation type. It can be either MD or EM.')
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  if __name__=='__main__':
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- main()
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+ main()
{pyloopsage-1.0.3 → pyloopsage-1.0.4}/pyLoopSage.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pyLoopSage
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- Version: 1.0.3
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+ Version: 1.0.4
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  Summary: An energy-based stochastic model of loop extrusion in chromatin.
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  Home-page: https://github.com/SFGLab/pyLoopSage
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  Author: Sebastian Korsak
{pyloopsage-1.0.3 → pyloopsage-1.0.4}/setup.py RENAMED
@@ -6,7 +6,7 @@ with open('README.md', 'r', encoding='utf-8') as f:
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  setup(
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  name='pyLoopSage', # Package name
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- version='1.0.3', # Version of the software
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+ version='1.0.4', # Version of the software
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  description='An energy-based stochastic model of loop extrusion in chromatin.',
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  long_description=long_description,
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  long_description_content_type='text/markdown',
{pyloopsage-1.0.3 → pyloopsage-1.0.4}/LICENSE RENAMED
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{pyloopsage-1.0.3 → pyloopsage-1.0.4}/README.md RENAMED
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{pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/em.py RENAMED
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{pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/md.py RENAMED
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{pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/plots.py RENAMED
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{pyloopsage-1.0.3 → pyloopsage-1.0.4}/loopsage/utils.py RENAMED
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{pyloopsage-1.0.3 → pyloopsage-1.0.4}/setup.cfg RENAMED
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