pyLoopSage 1.0.1__tar.gz → 1.0.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/PKG-INFO +1 -1
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/__init__.py +1 -1
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/utils.py +2 -2
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/pyLoopSage.egg-info/PKG-INFO +1 -1
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/setup.py +1 -1
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/LICENSE +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/README.md +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/args_definition.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/em.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/initial_structures.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/md.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/plots.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/preproc.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/run.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/stochastic_simulation.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/loopsage/vizualization_tools.py +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/pyLoopSage.egg-info/SOURCES.txt +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/pyLoopSage.egg-info/dependency_links.txt +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/pyLoopSage.egg-info/entry_points.txt +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/pyLoopSage.egg-info/requires.txt +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/pyLoopSage.egg-info/top_level.txt +0 -0
- {pyloopsage-1.0.1 → pyloopsage-1.0.2}/setup.cfg +0 -0
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@@ -122,7 +122,7 @@ def corr_exp_heat(mat_sim,bedpe_file,region,chrom,N_beads,path):
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axs[1].set_xlabel('Genomic Distance (with simumation beads as a unit)',fontsize=16)
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fig.savefig(path+'/plots/pearson.png',dpi=600)
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fig.savefig(path+'/plots/pearson.pdf',dpi=600)
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plt.close()
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return pears
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@@ -465,4 +465,4 @@ def save_info(N_beads,N_coh,N_CTCF,kappa,f,b,avg_loop,path,N_steps,MC_step,burni
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file.write(f'Average loop size {avg_loop}\n')
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file.write(f'f = {f}, b={b}, k={kappa}\n')
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file.write(f'Monte Carlo parameters: N_steps={N_steps}, MC_step={MC_step}, burnin={burnin*MC_step}, method {mode}\n')
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file.write(f'Equillibrium parameters: uf={np.average(ufs)}, E={np.average(Es)}, K={np.average(Ks)}, F={np.average(Fs)}, B={np.average(Bs)}')
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file.write(f'Equillibrium parameters: uf={np.average(ufs)}, E={np.average(Es)}, K={np.average(Ks)}, F={np.average(Fs)}, B={np.average(Bs)}')
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@@ -6,7 +6,7 @@ with open('README.md', 'r', encoding='utf-8') as f:
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setup(
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name='pyLoopSage', # Package name
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version='1.0.
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version='1.0.2', # Version of the software
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description='An energy-based stochastic model of loop extrusion in chromatin.',
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long_description=long_description,
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long_description_content_type='text/markdown',
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