pyCLINE 0.1.7__tar.gz → 0.1.9__tar.gz

{pycline-0.1.7 → pycline-0.1.9}/PKG-INFO

@@ -1,7 +1,7 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: pyCLINE
-Version: 0.1.7
-Summary: This package is the python implementation of the CLINE method introduced by Prokop, Billen, Frolov, Gelens (2025).
+Version: 0.1.9
+Summary: This package is the Python implementation of the CLINE method
 Author-email: Bartosz Prokop <bartosz.prokop@kuleuven.be>, Nikita Frolov <nikita.frolov@kuleuven.be>, Lendert Gelens <lendert.gelens@kuleuven.be>
 Project-URL: Homepage, https://pycline-ec8369.pages.gitlab.kuleuven.be/
 Project-URL: Issues, https://gitlab.kuleuven.be/gelenslab/publications/pycline/-/issues
@@ -19,6 +19,7 @@ Requires-Dist: torch>=2.4.1
 Requires-Dist: tqdm>=4.66.1
 Requires-Dist: jitcdde>=1.8.1
 Requires-Dist: scipy>=1.9.3
+Dynamic: license-file
 
 # PyCLINE - python package for CLINE
 
@@ -27,13 +28,13 @@ It can be downloaded from PyPI with pip by using
     
     pip install pyCLINE
 
-The package allows to recreate all data, models and results shown in XXX, and to apply CLINE to other data sets. 
-In order to generate data used in XXX, a set of different models is being provided under `pyCLINE.model`. 
+The package allows to recreate all data, models and results shown in [Prokop, Billen, Frolov and Gelens (2025)](https://arxiv.org/abs/2503.16240), and to apply CLINE to other data sets. 
+In order to generate data used in [Prokop, Billen, Frolov and Gelens (2025)](https://arxiv.org/abs/2503.16240), a set of different models is being provided under `pyCLINE.model`. 
 Data from these models can be generated using `pyCLINE.generate_data()`.
 For setting up the data prepartion and adjacent training a neural network, the submodule `pyCLINE.recovery_methods` is used. 
 The submodule contains the module for data_preparation `pyCLINE.recovery_methods.data_preparation` and for neural network training `pyCLINE.recovery_methods.nn_training`. 
 
-For a better understanding, `pyCLINE` also contains the module `pyCLINE.example` which provides four example also found in XXX with step by step instructions on how to setup a CLINE pipeline. 
+For a better understanding, `pyCLINE` also contains the module `pyCLINE.example` which provides four examples also found in XXX with step by step instructions on how to setup a CLINE pipeline. 
 
 The structure of `pyCLINE` is shown here: 
 

{pycline-0.1.7 → pycline-0.1.9}/README.md

@@ -5,13 +5,13 @@ It can be downloaded from PyPI with pip by using
     
     pip install pyCLINE
 
-The package allows to recreate all data, models and results shown in XXX, and to apply CLINE to other data sets. 
-In order to generate data used in XXX, a set of different models is being provided under `pyCLINE.model`. 
+The package allows to recreate all data, models and results shown in [Prokop, Billen, Frolov and Gelens (2025)](https://arxiv.org/abs/2503.16240), and to apply CLINE to other data sets. 
+In order to generate data used in [Prokop, Billen, Frolov and Gelens (2025)](https://arxiv.org/abs/2503.16240), a set of different models is being provided under `pyCLINE.model`. 
 Data from these models can be generated using `pyCLINE.generate_data()`.
 For setting up the data prepartion and adjacent training a neural network, the submodule `pyCLINE.recovery_methods` is used. 
 The submodule contains the module for data_preparation `pyCLINE.recovery_methods.data_preparation` and for neural network training `pyCLINE.recovery_methods.nn_training`. 
 
-For a better understanding, `pyCLINE` also contains the module `pyCLINE.example` which provides four example also found in XXX with step by step instructions on how to setup a CLINE pipeline. 
+For a better understanding, `pyCLINE` also contains the module `pyCLINE.example` which provides four examples also found in XXX with step by step instructions on how to setup a CLINE pipeline. 
 
 The structure of `pyCLINE` is shown here: 
 

{pycline-0.1.7 → pycline-0.1.9}/pyproject.toml

@@ -4,8 +4,8 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "pyCLINE"
-version = "0.1.7"
-description = "This package is the python implementation of the CLINE method introduced by Prokop, Billen, Frolov, Gelens (2025)."
+version = "0.1.9"
+description = "This package is the Python implementation of the CLINE method"
 readme = "README.md"
 requires-python = ">=3.10"
 classifiers = [ "Development Status :: 3 - Alpha", "Programming Language :: Python :: 3", "Operating System :: OS Independent",]

{pycline-0.1.7 → pycline-0.1.9}/src/pyCLINE/recovery_methods/data_preparation.py

@@ -201,12 +201,12 @@ def prepare_data(df, vars, time, tmin=None, tmax=None, scheme='newton_difference
         raise ValueError("Unknown scheme: {:}".format(scheme))
 
     # slice the data in the range [tmin; tmax] if needed
-    if ((tmin is None) or (tmax is None)):
-        if tmin is None:
-            tmin = df[time].min()
-        if tmax is None:
-            tmax = df[time].max()
-        df_slice = df[(df[time]>=tmin) & (df[time]<=tmax)].copy()
+    # if ((tmin is None) or (tmax is None)):
+    if tmin is None:
+        tmin = df[time].min()
+    if tmax is None:
+        tmax = df[time].max()
+    df_slice = df[(df[time]>=tmin) & (df[time]<=tmax)].copy()
 
     # min-max normalization of each variable in the range [value_min; value_max]
     if normalize:

{pycline-0.1.7 → pycline-0.1.9}/src/pyCLINE.egg-info/PKG-INFO

@@ -1,7 +1,7 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: pyCLINE
-Version: 0.1.7
-Summary: This package is the python implementation of the CLINE method introduced by Prokop, Billen, Frolov, Gelens (2025).
+Version: 0.1.9
+Summary: This package is the Python implementation of the CLINE method
 Author-email: Bartosz Prokop <bartosz.prokop@kuleuven.be>, Nikita Frolov <nikita.frolov@kuleuven.be>, Lendert Gelens <lendert.gelens@kuleuven.be>
 Project-URL: Homepage, https://pycline-ec8369.pages.gitlab.kuleuven.be/
 Project-URL: Issues, https://gitlab.kuleuven.be/gelenslab/publications/pycline/-/issues
@@ -19,6 +19,7 @@ Requires-Dist: torch>=2.4.1
 Requires-Dist: tqdm>=4.66.1
 Requires-Dist: jitcdde>=1.8.1
 Requires-Dist: scipy>=1.9.3
+Dynamic: license-file
 
 # PyCLINE - python package for CLINE
 
@@ -27,13 +28,13 @@ It can be downloaded from PyPI with pip by using
     
     pip install pyCLINE
 
-The package allows to recreate all data, models and results shown in XXX, and to apply CLINE to other data sets. 
-In order to generate data used in XXX, a set of different models is being provided under `pyCLINE.model`. 
+The package allows to recreate all data, models and results shown in [Prokop, Billen, Frolov and Gelens (2025)](https://arxiv.org/abs/2503.16240), and to apply CLINE to other data sets. 
+In order to generate data used in [Prokop, Billen, Frolov and Gelens (2025)](https://arxiv.org/abs/2503.16240), a set of different models is being provided under `pyCLINE.model`. 
 Data from these models can be generated using `pyCLINE.generate_data()`.
 For setting up the data prepartion and adjacent training a neural network, the submodule `pyCLINE.recovery_methods` is used. 
 The submodule contains the module for data_preparation `pyCLINE.recovery_methods.data_preparation` and for neural network training `pyCLINE.recovery_methods.nn_training`. 
 
-For a better understanding, `pyCLINE` also contains the module `pyCLINE.example` which provides four example also found in XXX with step by step instructions on how to setup a CLINE pipeline. 
+For a better understanding, `pyCLINE` also contains the module `pyCLINE.example` which provides four examples also found in XXX with step by step instructions on how to setup a CLINE pipeline. 
 
 The structure of `pyCLINE` is shown here: