py-modelrunner 0.20.1__tar.gz → 0.20.2__tar.gz

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: py-modelrunner
-Version: 0.20.1
+Version: 0.20.2
 Summary: Python classes for organizing (HPC) simulations
 Author-email: David Zwicker <david.zwicker@ds.mpg.de>
 License: MIT
@@ -78,9 +78,9 @@ function with several arguments, like so
 
 ```python
 def main(a: float = 1, b: int = 2, negate: bool = False):
-    res = a ** b
+    res = a**b
     if negate:
-    	res *= -1
+        res *= -1
     return res
 ```
 
@@ -133,8 +133,8 @@ parameters:
 ```python
 from modelrunner import ModelBase
 
-class MyModel(ModelBase):  # define custom model
 
+class MyModel(ModelBase):  # define custom model
     # defines supported parameters with default values
     parameters_default = {"a": 1, "b": 2}
 
@@ -143,7 +143,7 @@ class MyModel(ModelBase):  # define custom model
         return self.parameters["a"] * self.parameters["b"]
 
 
-model = MyModel({"a" : 3})
+model = MyModel({"a": 3})
 ```
 
 The last line actually creates an instance of the model with custom parameters.
@@ -153,10 +153,12 @@ Alternatively, a model can also be defined from a simple function:
 ```python
 from modelrunner import make_model
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 model = multiply(a=3)
 ```
 
@@ -219,10 +221,12 @@ A simple full script displaying this reads
 ```python
 from modelrunner import make_model, submit_job
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
     submit_job(__file__, parameters={"a": 2}, output="data.hdf5", method="foreground")
 ```
@@ -235,13 +239,17 @@ parameters to conduct a parameter study:
 ```python
 from modelrunner import make_model, submit_job
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
     for a in range(5):
-        submit_job(__file__, parameters={"a": a}, output=f"data_{a}.hdf5", method="foreground")
+        submit_job(
+            __file__, parameters={"a": a}, output=f"data_{a}.hdf5", method="foreground"
+        )
 ```
 
 Note that the safe-guard `if __name__ == "__main__"` is absolutely crucial to ensure that
@@ -254,12 +262,16 @@ We also support submitting multiple jobs of a parameter study:
 ```python
 from modelrunner import make_model, submit_jobs
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
-    submit_jobs(__file__, parameters={"a": range(5)}, output_folder="data", method="foreground")
+    submit_jobs(
+        __file__, parameters={"a": range(5)}, output_folder="data", method="foreground"
+    )
 ```
 
 Finally, the packages also offers a method to submit a model script to the cluster using

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/README.md

@@ -36,9 +36,9 @@ function with several arguments, like so
 
 ```python
 def main(a: float = 1, b: int = 2, negate: bool = False):
-    res = a ** b
+    res = a**b
     if negate:
-    	res *= -1
+        res *= -1
     return res
 ```
 
@@ -91,8 +91,8 @@ parameters:
 ```python
 from modelrunner import ModelBase
 
-class MyModel(ModelBase):  # define custom model
 
+class MyModel(ModelBase):  # define custom model
     # defines supported parameters with default values
     parameters_default = {"a": 1, "b": 2}
 
@@ -101,7 +101,7 @@ class MyModel(ModelBase):  # define custom model
         return self.parameters["a"] * self.parameters["b"]
 
 
-model = MyModel({"a" : 3})
+model = MyModel({"a": 3})
 ```
 
 The last line actually creates an instance of the model with custom parameters.
@@ -111,10 +111,12 @@ Alternatively, a model can also be defined from a simple function:
 ```python
 from modelrunner import make_model
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 model = multiply(a=3)
 ```
 
@@ -177,10 +179,12 @@ A simple full script displaying this reads
 ```python
 from modelrunner import make_model, submit_job
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
     submit_job(__file__, parameters={"a": 2}, output="data.hdf5", method="foreground")
 ```
@@ -193,13 +197,17 @@ parameters to conduct a parameter study:
 ```python
 from modelrunner import make_model, submit_job
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
     for a in range(5):
-        submit_job(__file__, parameters={"a": a}, output=f"data_{a}.hdf5", method="foreground")
+        submit_job(
+            __file__, parameters={"a": a}, output=f"data_{a}.hdf5", method="foreground"
+        )
 ```
 
 Note that the safe-guard `if __name__ == "__main__"` is absolutely crucial to ensure that
@@ -212,12 +220,16 @@ We also support submitting multiple jobs of a parameter study:
 ```python
 from modelrunner import make_model, submit_jobs
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
-    submit_jobs(__file__, parameters={"a": range(5)}, output_folder="data", method="foreground")
+    submit_jobs(
+        __file__, parameters={"a": range(5)}, output_folder="data", method="foreground"
+    )
 ```
 
 Finally, the packages also offers a method to submit a model script to the cluster using

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/modelrunner/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '0.20.1'
-__version_tuple__ = version_tuple = (0, 20, 1)
+__version__ = version = '0.20.2'
+__version_tuple__ = version_tuple = (0, 20, 2)
 
-__commit_id__ = commit_id = 'g25228fdcb'
+__commit_id__ = commit_id = 'g9f5fb441d'

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/modelrunner/run/templates/sbatch.jinja

@@ -10,13 +10,12 @@
 #SBATCH --job-name={{ JOB_NAME }}
 # Queue (Partition):
 {% if CONFIG['partition'] is defined %}
-#SBATCH -p {{ CONFIG['partition'] }}
+#SBATCH --partition {{ CONFIG['partition'] }}
 {% endif %}
 # Set max. runtime
 {% if CONFIG['time'] is defined %}
 #SBATCH --time={{ TIME }}
 {% endif %}
-#SBATCH --time=12:00:00
 
 hostname
 echo $JOB_ID

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/modelrunner/run/templates/srun.jinja

@@ -10,13 +10,12 @@
 #SBATCH --job-name={{ JOB_NAME }}
 # Queue (Partition):
 {% if CONFIG['partition'] is defined %}
-#SBATCH -p {{ CONFIG['partition'] }}
+#SBATCH --partition {{ CONFIG['partition'] }}
 {% endif %}
 # Set max. runtime
 {% if CONFIG['time'] is defined %}
 #SBATCH --time={{ TIME }}
 {% endif %}
-#SBATCH --time=12:00:00
 
 hostname
 echo $JOB_ID

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/modelrunner/storage/base.py

@@ -38,6 +38,10 @@ from .utils import encode_class
 if TYPE_CHECKING:
     from .group import StorageGroup
 
+
+# we allow unpickling since we otherwise cannot store arbitrary Python objects
+numcodecs.pickles.ALLOW_UNSAFE_PICKLE_DECODE = True
+
 _base_logger = logging.getLogger(__name__.rsplit(".", 1)[0])
 """:class:`logging.Logger`: Base logger for fields."""
 

{py_modelrunner-0.20.1 → py_modelrunner-0.20.2}/py_modelrunner.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: py-modelrunner
-Version: 0.20.1
+Version: 0.20.2
 Summary: Python classes for organizing (HPC) simulations
 Author-email: David Zwicker <david.zwicker@ds.mpg.de>
 License: MIT
@@ -78,9 +78,9 @@ function with several arguments, like so
 
 ```python
 def main(a: float = 1, b: int = 2, negate: bool = False):
-    res = a ** b
+    res = a**b
     if negate:
-    	res *= -1
+        res *= -1
     return res
 ```
 
@@ -133,8 +133,8 @@ parameters:
 ```python
 from modelrunner import ModelBase
 
-class MyModel(ModelBase):  # define custom model
 
+class MyModel(ModelBase):  # define custom model
     # defines supported parameters with default values
     parameters_default = {"a": 1, "b": 2}
 
@@ -143,7 +143,7 @@ class MyModel(ModelBase):  # define custom model
         return self.parameters["a"] * self.parameters["b"]
 
 
-model = MyModel({"a" : 3})
+model = MyModel({"a": 3})
 ```
 
 The last line actually creates an instance of the model with custom parameters.
@@ -153,10 +153,12 @@ Alternatively, a model can also be defined from a simple function:
 ```python
 from modelrunner import make_model
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 model = multiply(a=3)
 ```
 
@@ -219,10 +221,12 @@ A simple full script displaying this reads
 ```python
 from modelrunner import make_model, submit_job
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
     submit_job(__file__, parameters={"a": 2}, output="data.hdf5", method="foreground")
 ```
@@ -235,13 +239,17 @@ parameters to conduct a parameter study:
 ```python
 from modelrunner import make_model, submit_job
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
     for a in range(5):
-        submit_job(__file__, parameters={"a": a}, output=f"data_{a}.hdf5", method="foreground")
+        submit_job(
+            __file__, parameters={"a": a}, output=f"data_{a}.hdf5", method="foreground"
+        )
 ```
 
 Note that the safe-guard `if __name__ == "__main__"` is absolutely crucial to ensure that
@@ -254,12 +262,16 @@ We also support submitting multiple jobs of a parameter study:
 ```python
 from modelrunner import make_model, submit_jobs
 
+
 @make_model
 def multiply(a=1, b=2):
     return a * b
 
+
 if __name__ == "__main__":
-    submit_jobs(__file__, parameters={"a": range(5)}, output_folder="data", method="foreground")
+    submit_jobs(
+        __file__, parameters={"a": range(5)}, output_folder="data", method="foreground"
+    )
 ```
 
 Finally, the packages also offers a method to submit a model script to the cluster using