pubmed-client-py 0.0.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (164) hide show
  1. pubmed_client_py-0.0.1/Cargo.lock +4754 -0
  2. pubmed_client_py-0.0.1/Cargo.toml +19 -0
  3. pubmed_client_py-0.0.1/PKG-INFO +150 -0
  4. pubmed_client_py-0.0.1/README.md +126 -0
  5. pubmed_client_py-0.0.1/pubmed-client/Cargo.toml +146 -0
  6. pubmed_client_py-0.0.1/pubmed-client/README.md +350 -0
  7. pubmed_client_py-0.0.1/pubmed-client/src/cache.rs +129 -0
  8. pubmed_client_py-0.0.1/pubmed-client/src/config.rs +514 -0
  9. pubmed_client_py-0.0.1/pubmed-client/src/error.rs +155 -0
  10. pubmed_client_py-0.0.1/pubmed-client/src/lib.rs +559 -0
  11. pubmed_client_py-0.0.1/pubmed-client/src/pmc/client.rs +565 -0
  12. pubmed_client_py-0.0.1/pubmed-client/src/pmc/markdown.rs +896 -0
  13. pubmed_client_py-0.0.1/pubmed-client/src/pmc/mod.rs +20 -0
  14. pubmed_client_py-0.0.1/pubmed-client/src/pmc/models.rs +749 -0
  15. pubmed_client_py-0.0.1/pubmed-client/src/pmc/parser/author.rs +462 -0
  16. pubmed_client_py-0.0.1/pubmed-client/src/pmc/parser/metadata.rs +505 -0
  17. pubmed_client_py-0.0.1/pubmed-client/src/pmc/parser/mod.rs +150 -0
  18. pubmed_client_py-0.0.1/pubmed-client/src/pmc/parser/reference.rs +432 -0
  19. pubmed_client_py-0.0.1/pubmed-client/src/pmc/parser/section.rs +512 -0
  20. pubmed_client_py-0.0.1/pubmed-client/src/pmc/parser/xml_utils.rs +278 -0
  21. pubmed_client_py-0.0.1/pubmed-client/src/pmc/tar.rs +695 -0
  22. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/client.rs +941 -0
  23. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/mod.rs +20 -0
  24. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/models.rs +958 -0
  25. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/parser.rs +1182 -0
  26. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/advanced.rs +439 -0
  27. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/boolean.rs +274 -0
  28. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/builder.rs +313 -0
  29. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/date.rs +195 -0
  30. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/dates.rs +410 -0
  31. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/filters.rs +300 -0
  32. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/mod.rs +61 -0
  33. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/search.rs +480 -0
  34. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/query/validation.rs +373 -0
  35. pubmed_client_py-0.0.1/pubmed-client/src/pubmed/responses.rs +110 -0
  36. pubmed_client_py-0.0.1/pubmed-client/src/rate_limit.rs +218 -0
  37. pubmed_client_py-0.0.1/pubmed-client/src/retry.rs +346 -0
  38. pubmed_client_py-0.0.1/pubmed-client/src/time.rs +237 -0
  39. pubmed_client_py-0.0.1/pubmed-client/tests/human_verified/mod.rs +6 -0
  40. pubmed_client_py-0.0.1/pubmed-client/tests/integration/common/integration_test_utils.rs +91 -0
  41. pubmed_client_py-0.0.1/pubmed-client/tests/integration/common/mod.rs +310 -0
  42. pubmed_client_py-0.0.1/pubmed-client/tests/integration/comprehensive_einfo_tests.rs +113 -0
  43. pubmed_client_py-0.0.1/pubmed-client/tests/integration/comprehensive_elink_tests.rs +259 -0
  44. pubmed_client_py-0.0.1/pubmed-client/tests/integration/comprehensive_pmc_tests.rs +346 -0
  45. pubmed_client_py-0.0.1/pubmed-client/tests/integration/comprehensive_pubmed_tests.rs +647 -0
  46. pubmed_client_py-0.0.1/pubmed-client/tests/integration/error_handling_tests.rs +616 -0
  47. pubmed_client_py-0.0.1/pubmed-client/tests/integration/markdown_tests.rs +633 -0
  48. pubmed_client_py-0.0.1/pubmed-client/tests/integration/pmc_api_tests.rs +648 -0
  49. pubmed_client_py-0.0.1/pubmed-client/tests/integration/pmc_xml_tests.rs +220 -0
  50. pubmed_client_py-0.0.1/pubmed-client/tests/integration/pubmed_api_tests.rs +572 -0
  51. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_abstract_parsing.rs +128 -0
  52. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/assembly_info.json +610 -0
  53. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/bioproject_info.json +499 -0
  54. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/database_list.json +47 -0
  55. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/genome_info.json +398 -0
  56. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/nucleotide_info.json +399 -0
  57. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/pmc_info.json +551 -0
  58. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/protein_info.json +646 -0
  59. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/pubmed_info.json +861 -0
  60. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/snp_info.json +395 -0
  61. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/structure_info.json +712 -0
  62. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/einfo/taxonomy_info.json +426 -0
  63. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_25760099.json +10 -0
  64. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_26846451.json +68 -0
  65. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_27350240.json +16 -0
  66. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_28495875.json +322 -0
  67. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_29540945.json +10 -0
  68. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_31978945.json +13894 -0
  69. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_32887691.json +600 -0
  70. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_33515491.json +502 -0
  71. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_34567890.json +10 -0
  72. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_35123456.json +1 -0
  73. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/citations_multiple.json +14855 -0
  74. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_25760099.json +10 -0
  75. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_26846451.json +67 -0
  76. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_27350240.json +16 -0
  77. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_28495875.json +321 -0
  78. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_29540945.json +14 -0
  79. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_31978945.json +14947 -0
  80. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_32887691.json +634 -0
  81. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_33515491.json +522 -0
  82. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_34567890.json +14 -0
  83. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_35123456.json +13 -0
  84. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/pmc_links_multiple.json +15958 -0
  85. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_25760099.json +288 -0
  86. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_26846451.json +262 -0
  87. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_27350240.json +123 -0
  88. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_28495875.json +549 -0
  89. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_29540945.json +138 -0
  90. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_31978945.json +17225 -0
  91. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_32887691.json +1171 -0
  92. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_33515491.json +1766 -0
  93. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_34567890.json +149 -0
  94. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_35123456.json +222 -0
  95. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/api_responses/elink/related_multiple.json +19909 -0
  96. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10000000.xml +62 -0
  97. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10200000.xml +2218 -0
  98. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10300000.xml +1340 -0
  99. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10400000.xml +738 -0
  100. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10455298.xml +1 -0
  101. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10500000.xml +179 -0
  102. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10618641.xml +3385 -0
  103. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10653940.xml +2548 -0
  104. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10767945.xml +1853 -0
  105. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10777901.xml +1126 -0
  106. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC10821037.xml +2739 -0
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  109. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC3500000.xml +1082 -0
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  111. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC5000000.xml +89 -0
  112. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC6000000.xml +1187 -0
  113. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC6500000.xml +1751 -0
  114. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC7500000.xml +2061 -0
  115. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC7906746.xml +4 -0
  116. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC9000000.xml +1393 -0
  117. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pmc_xml/PMC9500000.xml +2083 -0
  118. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/25760099.xml +4 -0
  119. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/26846451.xml +12 -0
  120. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/27350240.xml +4 -0
  121. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/28495875.xml +4 -0
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  129. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/37456789.xml +4 -0
  130. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/38123456.xml +9 -0
  131. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/39789012.xml +4 -0
  132. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_data/pubmed_xml/40456789.xml +4 -0
  133. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_einfo_integration.rs +154 -0
  134. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_elink_integration.rs +213 -0
  135. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_figure_extraction.rs +393 -0
  136. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_integration_abstract.rs +99 -0
  137. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_mesh_integration.rs +91 -0
  138. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_pmc_cache.rs +245 -0
  139. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_rate_limiting_mocked.rs +406 -0
  140. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_real_api_rate_limiting.rs +598 -0
  141. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_supplementary_materials.rs +212 -0
  142. pubmed_client_py-0.0.1/pubmed-client/tests/integration/test_tar_extraction.rs +113 -0
  143. pubmed_client_py-0.0.1/pubmed-client/tests/test_retry_logic.rs +280 -0
  144. pubmed_client_py-0.0.1/pubmed-client-py/Cargo.toml +30 -0
  145. pubmed_client_py-0.0.1/pubmed-client-py/README.md +126 -0
  146. pubmed_client_py-0.0.1/pubmed-client-py/examples/01_fetch_pubmed_metadata.py +132 -0
  147. pubmed_client_py-0.0.1/pubmed-client-py/examples/02_fetch_pmc_fulltext.py +139 -0
  148. pubmed_client_py-0.0.1/pubmed-client-py/examples/03_search_pubmed.py +92 -0
  149. pubmed_client_py-0.0.1/pubmed-client-py/examples/04_citation_analysis.py +134 -0
  150. pubmed_client_py-0.0.1/pubmed-client-py/examples/README.md +308 -0
  151. pubmed_client_py-0.0.1/pubmed-client-py/pubmed_client.pyi +190 -0
  152. pubmed_client_py-0.0.1/pubmed-client-py/py.typed +0 -0
  153. pubmed_client_py-0.0.1/pubmed-client-py/pytest.ini +25 -0
  154. pubmed_client_py-0.0.1/pubmed-client-py/src/lib.rs +1207 -0
  155. pubmed_client_py-0.0.1/pubmed-client-py/tests/README.md +181 -0
  156. pubmed_client_py-0.0.1/pubmed-client-py/tests/__init__.py +1 -0
  157. pubmed_client_py-0.0.1/pubmed-client-py/tests/conftest.py +31 -0
  158. pubmed_client_py-0.0.1/pubmed-client-py/tests/test_client.py +82 -0
  159. pubmed_client_py-0.0.1/pubmed-client-py/tests/test_config.py +80 -0
  160. pubmed_client_py-0.0.1/pubmed-client-py/tests/test_integration.py +192 -0
  161. pubmed_client_py-0.0.1/pubmed-client-py/tests/test_models.py +264 -0
  162. pubmed_client_py-0.0.1/pubmed-client-py/uv.lock +260 -0
  163. pubmed_client_py-0.0.1/pubmed_client.pyi +190 -0
  164. pubmed_client_py-0.0.1/pyproject.toml +131 -0
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