publiplots 0.1.0__tar.gz

publiplots-0.1.0/.gitignore

@@ -0,0 +1,207 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[codz]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py.cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+#poetry.toml
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#   pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
+#   https://pdm-project.org/en/latest/usage/project/#working-with-version-control
+#pdm.lock
+#pdm.toml
+.pdm-python
+.pdm-build/
+
+# pixi
+#   Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
+#pixi.lock
+#   Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
+#   in the .venv directory. It is recommended not to include this directory in version control.
+.pixi
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.envrc
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Abstra
+# Abstra is an AI-powered process automation framework.
+# Ignore directories containing user credentials, local state, and settings.
+# Learn more at https://abstra.io/docs
+.abstra/
+
+# Visual Studio Code
+#  Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore 
+#  that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
+#  and can be added to the global gitignore or merged into this file. However, if you prefer, 
+#  you could uncomment the following to ignore the entire vscode folder
+# .vscode/
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# Cursor
+#  Cursor is an AI-powered code editor. `.cursorignore` specifies files/directories to
+#  exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
+#  refer to https://docs.cursor.com/context/ignore-files
+.cursorignore
+.cursorindexingignore
+
+# Marimo
+marimo/_static/
+marimo/_lsp/
+__marimo__/

publiplots-0.1.0/CHANGELOG.md

@@ -0,0 +1,28 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+
+## [0.1.0] - 2025-01-XX
+
+### Added
+- Initial release
+- Base plotting functions:
+  - `barplot()` - Bar plots with error bars and grouping
+  - `scatterplot()` - Scatter plots with flexible styling
+- Advanced plotting functions:
+  - `venn()` - 2-way and 3-way Venn diagrams
+- Theme system:
+  - Pastel color palettes optimized for publications
+  - Publication, minimal, and poster style presets
+  - Customizable marker and hatch patterns
+- Utilities:
+  - Legend builders with custom handlers
+  - File I/O with `savefig()`
+  - Axes manipulation utilities
+- Comprehensive documentation and examples
+
+[0.1.0]: https://github.com/jorgebotas/publiplots/releases/tag/v0.1.0

publiplots-0.1.0/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2025 Jorge Botas
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

publiplots-0.1.0/PKG-INFO

@@ -0,0 +1,166 @@
+Metadata-Version: 2.4
+Name: publiplots
+Version: 0.1.0
+Summary: Publication-ready plotting with a clean, modular API
+Project-URL: Homepage, https://github.com/jorgebotas/publiplots
+Project-URL: Documentation, https://github.com/jorgebotas/publiplots
+Project-URL: Repository, https://github.com/jorgebotas/publiplots
+Project-URL: Issues, https://github.com/jorgebotas/publiplots/issues
+Author-email: Jorge Botas <jorgebotas.github@gmail.com>
+License: MIT
+License-File: LICENSE
+Keywords: matplotlib,plotting,publication,seaborn,visualization
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Requires-Python: >=3.9
+Requires-Dist: matplotlib-venn>=0.11.0
+Requires-Dist: matplotlib>=3.5.0
+Requires-Dist: numpy>=1.21.0
+Requires-Dist: pandas>=1.3.0
+Requires-Dist: scipy>=1.7.0
+Requires-Dist: seaborn>=0.12.0
+Provides-Extra: dev
+Requires-Dist: black>=23.0.0; extra == 'dev'
+Requires-Dist: mypy>=1.0.0; extra == 'dev'
+Requires-Dist: pytest-cov>=4.0.0; extra == 'dev'
+Requires-Dist: pytest>=7.0.0; extra == 'dev'
+Requires-Dist: ruff>=0.1.0; extra == 'dev'
+Description-Content-Type: text/markdown
+
+# PubliPlots
+
+Publication-ready plots
+
+## Overview
+
+PubliPlots is a Python visualization library that provides beautiful, publication-ready plots with a seaborn-like API. It focuses on:
+
+- **Beautiful defaults**: Carefully designed pastel color palettes and styles
+- **Intuitive API**: Follows seaborn conventions for ease of use
+- **Modular design**: Compose complex visualizations from simple building blocks
+- **Highly configurable**: Extensive customization while maintaining sensible defaults
+- **Publication-ready**: Optimized for scientific publications and presentations
+
+## Installation
+
+### From source (development)
+
+```bash
+git clone https://github.com/jorgebotas/publiplots.git
+cd publiplots
+pip install -e .
+```
+
+### Development with uv and Jupyter
+
+If you're using [uv](https://github.com/astral-sh/uv) for Python environment management and want to use the package in Jupyter notebooks:
+
+```bash
+# Clone the repository
+git clone https://github.com/jorgebotas/publiplots.git
+cd publiplots
+
+# Create a new uv environment with Python 3.11 (or your preferred version)
+uv venv --python 3.11
+
+# Activate the environment
+source .venv/bin/activate  # On Linux/macOS
+# or
+.venv\Scripts\activate  # On Windows
+
+# Install the package in editable mode with all dependencies
+uv pip install -e .
+
+# Install ipykernel to make the environment available in Jupyter
+uv pip install ipykernel
+
+# Register the environment as a Jupyter kernel
+python -m ipykernel install --user --name=publiplots --display-name="Python (publiplots)"
+```
+
+Now you can select the "Python (publiplots)" kernel in Jupyter Lab or Jupyter Notebook and import publiplots:
+
+```python
+import publiplots as pp
+```
+
+### From PyPI (coming soon)
+
+```bash
+pip install publiplots
+```
+
+## Quick Start
+
+```python
+import publiplots as pp
+import pandas as pd
+
+# Apply publication style globally
+pp.set_publication_style()
+
+# Create a scatter plot
+fig, ax = pp.scatterplot(
+    data=df,
+    x='measurement_a',
+    y='measurement_b',
+    hue='condition',
+    palette=pp.get_palette('pastel_categorical', n_colors=3)
+)
+
+# Save with publication-ready settings
+pp.savefig(fig, 'figure.pdf')
+```
+
+## Features
+
+### Base Plotting Functions
+
+- `scatterplot()` - Scatter plots with flexible styling
+- `barplot()` - Bar plots with error bars and grouping
+
+### Advanced Functions
+
+- `venn()` - 2-way and 3-way Venn diagrams
+
+### Theming
+
+- Pastel color palettes optimized for publications
+- Customizable matplotlib styles
+- Consistent styling across all plots
+
+## Documentation
+
+Full documentation is available at [github.com/jorgebotas/publiplots](https://github.com/jorgebotas/publiplots)
+
+## Development Status
+
+PubliPlots is currently in active development (v0.1.0). The API may change in future releases.
+
+## Contributing
+
+Contributions are welcome! Please feel free to submit issues or pull requests.
+
+## Citation
+
+If you use PubliPlots in your research, please cite:
+
+```
+Botas, J. (2025). PubliPlots: Publication-ready plotting for Python.
+GitHub: https://github.com/jorgebotas/publiplots
+```
+
+## License
+
+MIT License - see LICENSE file for details.
+
+## Author
+
+Jorge Botas ([@jorgebotas](https://github.com/jorgebotas))

publiplots-0.1.0/README.md

@@ -0,0 +1,130 @@
+# PubliPlots
+
+Publication-ready plots
+
+## Overview
+
+PubliPlots is a Python visualization library that provides beautiful, publication-ready plots with a seaborn-like API. It focuses on:
+
+- **Beautiful defaults**: Carefully designed pastel color palettes and styles
+- **Intuitive API**: Follows seaborn conventions for ease of use
+- **Modular design**: Compose complex visualizations from simple building blocks
+- **Highly configurable**: Extensive customization while maintaining sensible defaults
+- **Publication-ready**: Optimized for scientific publications and presentations
+
+## Installation
+
+### From source (development)
+
+```bash
+git clone https://github.com/jorgebotas/publiplots.git
+cd publiplots
+pip install -e .
+```
+
+### Development with uv and Jupyter
+
+If you're using [uv](https://github.com/astral-sh/uv) for Python environment management and want to use the package in Jupyter notebooks:
+
+```bash
+# Clone the repository
+git clone https://github.com/jorgebotas/publiplots.git
+cd publiplots
+
+# Create a new uv environment with Python 3.11 (or your preferred version)
+uv venv --python 3.11
+
+# Activate the environment
+source .venv/bin/activate  # On Linux/macOS
+# or
+.venv\Scripts\activate  # On Windows
+
+# Install the package in editable mode with all dependencies
+uv pip install -e .
+
+# Install ipykernel to make the environment available in Jupyter
+uv pip install ipykernel
+
+# Register the environment as a Jupyter kernel
+python -m ipykernel install --user --name=publiplots --display-name="Python (publiplots)"
+```
+
+Now you can select the "Python (publiplots)" kernel in Jupyter Lab or Jupyter Notebook and import publiplots:
+
+```python
+import publiplots as pp
+```
+
+### From PyPI (coming soon)
+
+```bash
+pip install publiplots
+```
+
+## Quick Start
+
+```python
+import publiplots as pp
+import pandas as pd
+
+# Apply publication style globally
+pp.set_publication_style()
+
+# Create a scatter plot
+fig, ax = pp.scatterplot(
+    data=df,
+    x='measurement_a',
+    y='measurement_b',
+    hue='condition',
+    palette=pp.get_palette('pastel_categorical', n_colors=3)
+)
+
+# Save with publication-ready settings
+pp.savefig(fig, 'figure.pdf')
+```
+
+## Features
+
+### Base Plotting Functions
+
+- `scatterplot()` - Scatter plots with flexible styling
+- `barplot()` - Bar plots with error bars and grouping
+
+### Advanced Functions
+
+- `venn()` - 2-way and 3-way Venn diagrams
+
+### Theming
+
+- Pastel color palettes optimized for publications
+- Customizable matplotlib styles
+- Consistent styling across all plots
+
+## Documentation
+
+Full documentation is available at [github.com/jorgebotas/publiplots](https://github.com/jorgebotas/publiplots)
+
+## Development Status
+
+PubliPlots is currently in active development (v0.1.0). The API may change in future releases.
+
+## Contributing
+
+Contributions are welcome! Please feel free to submit issues or pull requests.
+
+## Citation
+
+If you use PubliPlots in your research, please cite:
+
+```
+Botas, J. (2025). PubliPlots: Publication-ready plotting for Python.
+GitHub: https://github.com/jorgebotas/publiplots
+```
+
+## License
+
+MIT License - see LICENSE file for details.
+
+## Author
+
+Jorge Botas ([@jorgebotas](https://github.com/jorgebotas))

publiplots-0.1.0/pyproject.toml

@@ -0,0 +1,84 @@
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "publiplots"
+version = "0.1.0"
+description = "Publication-ready plotting with a clean, modular API"
+readme = "README.md"
+requires-python = ">=3.9"
+license = {text = "MIT"}
+authors = [
+    {name = "Jorge Botas", email = "jorgebotas.github@gmail.com"}
+]
+keywords = ["plotting", "visualization", "matplotlib", "seaborn", "publication"]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: MIT License",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Topic :: Scientific/Engineering :: Visualization",
+]
+
+dependencies = [
+    "matplotlib>=3.5.0",
+    "seaborn>=0.12.0",
+    "numpy>=1.21.0",
+    "pandas>=1.3.0",
+    "scipy>=1.7.0",
+    "matplotlib-venn>=0.11.0",
+]
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=7.0.0",
+    "pytest-cov>=4.0.0",
+    "black>=23.0.0",
+    "mypy>=1.0.0",
+    "ruff>=0.1.0",
+]
+
+[project.urls]
+Homepage = "https://github.com/jorgebotas/publiplots"
+Documentation = "https://github.com/jorgebotas/publiplots"
+Repository = "https://github.com/jorgebotas/publiplots"
+Issues = "https://github.com/jorgebotas/publiplots/issues"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/publiplots"]
+
+[tool.hatch.build.targets.sdist]
+include = [
+    "src/",
+    "README.md",
+    "LICENSE",
+    "CHANGELOG.md",
+]
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+python_files = ["test_*.py"]
+python_classes = ["Test*"]
+python_functions = ["test_*"]
+addopts = "--cov=publiplots --cov-report=html --cov-report=term-missing"
+
+[tool.black]
+line-length = 88
+target-version = ["py39"]
+include = '\.pyi?$'
+
+[tool.ruff]
+line-length = 88
+target-version = "py39"
+select = ["E", "F", "I", "N", "W"]
+
+[tool.mypy]
+python_version = "3.9"
+warn_return_any = true
+warn_unused_configs = true
+disallow_untyped_defs = false