psiphy 0.1.1__tar.gz

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Files changed (43) hide show
  1. psiphy-0.1.1/LICENSE +21 -0
  2. psiphy-0.1.1/PKG-INFO +82 -0
  3. psiphy-0.1.1/README.md +40 -0
  4. psiphy-0.1.1/pyproject.toml +59 -0
  5. psiphy-0.1.1/setup.cfg +4 -0
  6. psiphy-0.1.1/src/psiphy/__init__.py +33 -0
  7. psiphy-0.1.1/src/psiphy/forecasting/__init__.py +1 -0
  8. psiphy-0.1.1/src/psiphy/forecasting/fisher.py +1136 -0
  9. psiphy-0.1.1/src/psiphy/mcmc/__init__.py +7 -0
  10. psiphy-0.1.1/src/psiphy/mcmc/importance_sampling.py +316 -0
  11. psiphy-0.1.1/src/psiphy/plotting/__init__.py +22 -0
  12. psiphy-0.1.1/src/psiphy/plotting/corner.py +416 -0
  13. psiphy-0.1.1/src/psiphy/plotting/diagnostics.py +666 -0
  14. psiphy-0.1.1/src/psiphy/plotting/mcmc_chains.py +403 -0
  15. psiphy-0.1.1/src/psiphy/sbi/__init__.py +24 -0
  16. psiphy-0.1.1/src/psiphy/sbi/abc_gp.py +128 -0
  17. psiphy-0.1.1/src/psiphy/sbi/bolfi.py +449 -0
  18. psiphy-0.1.1/src/psiphy/sbi/lfire.py +379 -0
  19. psiphy-0.1.1/src/psiphy/sbi/rejection_abc.py +33 -0
  20. psiphy-0.1.1/src/psiphy/sbi/sre.py +61 -0
  21. psiphy-0.1.1/src/psiphy/toy_models/__init__.py +5 -0
  22. psiphy-0.1.1/src/psiphy/toy_models/cosmological.py +71 -0
  23. psiphy-0.1.1/src/psiphy/toy_models/gaussian.py +64 -0
  24. psiphy-0.1.1/src/psiphy/toy_models/line_fitting.py +62 -0
  25. psiphy-0.1.1/src/psiphy/toy_models/lotka_volterra.py +146 -0
  26. psiphy-0.1.1/src/psiphy/toy_models/ma2.py +62 -0
  27. psiphy-0.1.1/src/psiphy/utils/__init__.py +18 -0
  28. psiphy-0.1.1/src/psiphy/utils/bayesian_opt.py +529 -0
  29. psiphy-0.1.1/src/psiphy/utils/distances.py +12 -0
  30. psiphy-0.1.1/src/psiphy/utils/gp_skopt.py +227 -0
  31. psiphy-0.1.1/src/psiphy/utils/helpers.py +30 -0
  32. psiphy-0.1.1/src/psiphy/utils/kernel_density.py +99 -0
  33. psiphy-0.1.1/src/psiphy/utils/sampling_space.py +125 -0
  34. psiphy-0.1.1/src/psiphy.egg-info/PKG-INFO +82 -0
  35. psiphy-0.1.1/src/psiphy.egg-info/SOURCES.txt +41 -0
  36. psiphy-0.1.1/src/psiphy.egg-info/dependency_links.txt +1 -0
  37. psiphy-0.1.1/src/psiphy.egg-info/requires.txt +34 -0
  38. psiphy-0.1.1/src/psiphy.egg-info/top_level.txt +1 -0
  39. psiphy-0.1.1/tests/test_diagnostics.py +249 -0
  40. psiphy-0.1.1/tests/test_importance_sampling.py +132 -0
  41. psiphy-0.1.1/tests/test_imports.py +20 -0
  42. psiphy-0.1.1/tests/test_toy_models.py +133 -0
  43. psiphy-0.1.1/tests/test_utils.py +25 -0
psiphy-0.1.1/LICENSE ADDED
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+ MIT License
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+
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+ Copyright (c) 2026 Sambit Kumar Giri
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
psiphy-0.1.1/PKG-INFO ADDED
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+ Metadata-Version: 2.4
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+ Name: psiphy
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+ Version: 0.1.1
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+ Summary: Package for Statistical Inference of Physics — cosmological parameter inference tools
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+ Author-email: Sambit Giri <sambit.giri@astro.su.se>
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+ License: MIT
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+ Project-URL: Homepage, https://github.com/sambit-giri/psiphy
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+ Project-URL: Issues, https://github.com/sambit-giri/psiphy/issues
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+ Requires-Python: >=3.9
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: numpy
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+ Requires-Dist: scipy
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+ Requires-Dist: matplotlib
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: scikit-image
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+ Requires-Dist: getdist
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+ Provides-Extra: mcmc
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+ Requires-Dist: emcee; extra == "mcmc"
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+ Requires-Dist: dynesty; extra == "mcmc"
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+ Requires-Dist: nautilus-sampler; extra == "mcmc"
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+ Provides-Extra: sbi
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+ Requires-Dist: sbi; extra == "sbi"
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+ Requires-Dist: torch; extra == "sbi"
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+ Provides-Extra: hmc
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+ Requires-Dist: blackjax; extra == "hmc"
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+ Requires-Dist: jax; extra == "hmc"
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+ Requires-Dist: jaxlib; extra == "hmc"
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+ Provides-Extra: docs
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+ Requires-Dist: sphinx; extra == "docs"
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+ Requires-Dist: sphinx-rtd-theme; extra == "docs"
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+ Requires-Dist: myst-parser; extra == "docs"
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+ Requires-Dist: numpydoc; extra == "docs"
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+ Requires-Dist: nbsphinx; extra == "docs"
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+ Requires-Dist: ipykernel; extra == "docs"
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+ Provides-Extra: dev
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+ Requires-Dist: pytest; extra == "dev"
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+ Requires-Dist: pytest-cov; extra == "dev"
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+ Requires-Dist: ruff; extra == "dev"
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+ Requires-Dist: psiphy[docs,hmc,mcmc,sbi]; extra == "dev"
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+ Dynamic: license-file
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+
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+ # psiphy — Package for Statistical Inference of Physics
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+
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+ <img src="docs/logo_cropped.png" alt="psiphy logo" width="120" align="right"/>
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+
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+ [![License](https://img.shields.io/github/license/sambit-giri/psiphy.svg)](https://github.com/sambit-giri/psiphy/blob/master/LICENSE)
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+ [![GitHub Repository](https://img.shields.io/github/repo-size/sambit-giri/psiphy)](https://github.com/sambit-giri/psiphy)
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+ [![CI status](https://github.com/sambit-giri/psiphy/actions/workflows/ci.yml/badge.svg)](https://github.com/sambit-giri/psiphy/actions/workflows/ci.yml)
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+ [![Documentation](https://img.shields.io/badge/Documentation-here-blue)](https://sambit-giri.github.io/psiphy)
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+
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+ A Python package for cosmological parameter inference, providing tools for
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+ simulation-based inference (SBI), MCMC sampling, Fisher forecasting, and
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+ posterior diagnostics.
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+
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+ ## Installation
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+
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+ Install directly from GitHub:
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+
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+ pip install git+https://github.com/sambit-giri/psiphy.git
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+
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+ To include optional dependencies (e.g. MCMC samplers):
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+
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+ pip install "git+https://github.com/sambit-giri/psiphy.git#egg=psiphy[mcmc]"
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+
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+ For a local editable install (recommended for development):
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+
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+ git clone https://github.com/sambit-giri/psiphy.git
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+ cd psiphy
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+ pip install -e ".[dev]"
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+
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+ ## Running the tests
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+
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+ The test suite uses [pytest](https://pytest.org). After installing with the `dev` extras:
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+
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+ pytest tests/ -v
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+
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+ Tests cover package imports, toy model simulators, and sampling utilities. New tests are added alongside each new module.
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+
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+ ## Contributing and feedback
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+
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+ Bug reports, feature requests, and questions are welcome — please open an issue on the [GitHub issue tracker](https://github.com/sambit-giri/psiphy/issues). Pull requests are also encouraged.
psiphy-0.1.1/README.md ADDED
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+ # psiphy — Package for Statistical Inference of Physics
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+
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+ <img src="docs/logo_cropped.png" alt="psiphy logo" width="120" align="right"/>
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+
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+ [![License](https://img.shields.io/github/license/sambit-giri/psiphy.svg)](https://github.com/sambit-giri/psiphy/blob/master/LICENSE)
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+ [![GitHub Repository](https://img.shields.io/github/repo-size/sambit-giri/psiphy)](https://github.com/sambit-giri/psiphy)
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+ [![CI status](https://github.com/sambit-giri/psiphy/actions/workflows/ci.yml/badge.svg)](https://github.com/sambit-giri/psiphy/actions/workflows/ci.yml)
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+ [![Documentation](https://img.shields.io/badge/Documentation-here-blue)](https://sambit-giri.github.io/psiphy)
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+
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+ A Python package for cosmological parameter inference, providing tools for
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+ simulation-based inference (SBI), MCMC sampling, Fisher forecasting, and
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+ posterior diagnostics.
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+
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+ ## Installation
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+
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+ Install directly from GitHub:
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+
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+ pip install git+https://github.com/sambit-giri/psiphy.git
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+
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+ To include optional dependencies (e.g. MCMC samplers):
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+
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+ pip install "git+https://github.com/sambit-giri/psiphy.git#egg=psiphy[mcmc]"
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+
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+ For a local editable install (recommended for development):
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+
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+ git clone https://github.com/sambit-giri/psiphy.git
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+ cd psiphy
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+ pip install -e ".[dev]"
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+
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+ ## Running the tests
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+
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+ The test suite uses [pytest](https://pytest.org). After installing with the `dev` extras:
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+
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+ pytest tests/ -v
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+
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+ Tests cover package imports, toy model simulators, and sampling utilities. New tests are added alongside each new module.
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+
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+ ## Contributing and feedback
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+
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+ Bug reports, feature requests, and questions are welcome — please open an issue on the [GitHub issue tracker](https://github.com/sambit-giri/psiphy/issues). Pull requests are also encouraged.
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+ [build-system]
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+ requires = ["setuptools>=64"]
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+ build-backend = "setuptools.build_meta"
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+
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+ [project]
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+ name = "psiphy"
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+ version = "0.1.1"
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+ description = "Package for Statistical Inference of Physics — cosmological parameter inference tools"
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+ readme = "README.md"
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+ license = { text = "MIT" }
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+ authors = [
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+ { name = "Sambit Giri", email = "sambit.giri@astro.su.se" },
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+ ]
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+ requires-python = ">=3.9"
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+ dependencies = [
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+ "numpy",
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+ "scipy",
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+ "matplotlib",
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+ "scikit-learn",
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+ "scikit-image",
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+ "getdist",
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+ ]
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+
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+ [project.optional-dependencies]
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+ mcmc = [
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+ "emcee",
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+ "dynesty",
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+ "nautilus-sampler",
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+ ]
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+ sbi = [
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+ "sbi",
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+ "torch",
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+ ]
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+ hmc = [
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+ "blackjax",
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+ "jax",
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+ "jaxlib",
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+ ]
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+ docs = [
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+ "sphinx",
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+ "sphinx-rtd-theme",
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+ "myst-parser",
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+ "numpydoc",
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+ "nbsphinx",
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+ "ipykernel",
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+ ]
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+ dev = [
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+ "pytest",
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+ "pytest-cov",
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+ "ruff",
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+ "psiphy[mcmc,sbi,hmc,docs]",
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+ ]
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+
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+ [project.urls]
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+ Homepage = "https://github.com/sambit-giri/psiphy"
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+ Issues = "https://github.com/sambit-giri/psiphy/issues"
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+
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+ [tool.setuptools.packages.find]
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+ where = ["src"]
psiphy-0.1.1/setup.cfg ADDED
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+ [egg_info]
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+ tag_build =
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+ tag_date = 0
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+
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+ """
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+ psiphy — Package for Statistical Inference of Physics
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+
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+ A Python package for cosmological parameter inference, providing tools for
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+ simulation-based inference (SBI), MCMC sampling, Fisher forecasting, and
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+ posterior diagnostics.
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+
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+ Submodules
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+ ----------
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+ psiphy.sbi : Likelihood-free / simulation-based inference (BOLFI, LFIRE, ABC, SRE)
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+ psiphy.mcmc : MCMC samplers (MH/emcee, nested sampling, HMC)
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+ psiphy.forecasting: Fisher matrix forecasting
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+ psiphy.plotting : Posterior corner plots and diagnostics
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+ psiphy.toy_models : Example simulators for testing and benchmarking
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+ psiphy.utils : Shared utilities (distances, KDE, sampling, helpers)
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+ """
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+
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+ import importlib.metadata
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+
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+ try:
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+ __version__ = importlib.metadata.version("psiphy")
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+ except importlib.metadata.PackageNotFoundError:
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+ __version__ = "unknown"
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+
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+ import numpy
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+ numpy.seterr(all='ignore')
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+
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+ from . import utils
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+ from . import sbi
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+ from . import mcmc
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+ from . import forecasting
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+ from . import plotting
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+ from . import toy_models
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+ from .fisher import FisherMatrix