psdi-data-conversion 0.0.23__tar.gz → 0.0.29__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- psdi_data_conversion-0.0.29/.github/workflows/ci-release.yml +130 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/PKG-INFO +1 -1
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/pyproject.toml +5 -2
- psdi_data_conversion-0.0.23/.github/workflows/ci-release.yml +0 -59
- psdi_data_conversion-0.0.23/.github/workflows/job-publish-pypi.yml +0 -74
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-cron.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-deploy-production.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-feature.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-main.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-pr.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-rc-hotfix.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-anchore-scan.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-container-push.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-deploy-azure.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-deploy-k8s.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-open-pull-request.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-publish-doc.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-tag.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-test-gui.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-test-python.yml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.gitignore +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/CHANGELOG.md +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/CONTRIBUTING.md +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/LICENSE +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/README.md +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/__init__.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/app.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/linux/atomsk +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/linux/c2x +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/mac/atomsk +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/mac/c2x +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/constants.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converter.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/__init__.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/atomsk.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/base.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/c2x.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/openbabel.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/database.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/dist.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/file_io.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/log_utility.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/main.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/scripts/atomsk.sh +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/scripts/c2x.sh +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/security.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/accessibility.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/convert.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/convertato.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/convertc2x.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/documentation.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/feedback.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/header-links.html +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/index-versions/header-links.html +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/index-versions/psdi-common-footer.html +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/index-versions/psdi-common-header.html +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/psdi-common-footer.html +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/psdi-common-header.html +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/content/report.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/data/data.json +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/colormode-toggle-dm.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/colormode-toggle-lm.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/psdi-icon-dark.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/psdi-icon-light.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/psdi-logo-darktext.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/psdi-logo-lighttext.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-bluesky-black.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-bluesky-white.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-instagram-black.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-instagram-white.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-linkedin-black.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-linkedin-white.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-mastodon-black.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-mastodon-white.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-x-black.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-x-white.svg +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-youtube-black.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/social-logo-youtube-white.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/ukri-epsr-logo-darktext.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/ukri-epsr-logo-lighttext.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/ukri-logo-darktext.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/img/ukri-logo-lighttext.png +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/accessibility.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/common.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/convert.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/convert_common.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/convertato.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/convertc2x.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/data.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/format.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/load_accessibility.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/psdi-common.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/javascript/report.js +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/styles/format.css +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/static/styles/psdi-common.css +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/templates/index.htm +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/testing/__init__.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/testing/constants.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/testing/conversion_callbacks.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/testing/conversion_test_specs.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/testing/utils.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/run_local.sh +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/scripts/setup_bin.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/1ARJ.mmcif +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/1NE6.mmcif +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/5a9z-assembly1.cif +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/Fapatite.ins +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/aceticacid.mol +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/benzyne.molden +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/caffeine-smi.tar +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/caffeine-smi.tar.gz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/caffeine-smi.zip +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/caffeine.inchi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/ch3cl-esp.cub +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/cyclopropane_err.mol +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/ethanol.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/fullRhinovirus.pdb +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/hemoglobin.pdb +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/nacl.cif +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/nacl.mol +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/aceticacid.log.txt +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/aceticacid.mol2 +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-2D-fastest.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-3D-best.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-ia-okx-oof4.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-ia-okx-oof4l5.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-ia-okx.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-ia-ox.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-ia.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine-no-flags.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine_a_in.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine_a_in_kx_f4_l5_out.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine_a_in_kx_f4_out.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine_a_in_kx_out.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/caffeine_a_in_x_out.smi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/error_Fapatite_ins_to_cml_OB +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/error_cyclopropane_mol_to_xyz_c2x +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/error_nacl_mol_to_xyz_atomsk +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/hemoglobin_Atomsk.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/hemoglobin_c2x.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/nacl.log +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/nacl.mol +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/quartz_OB.cif +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/quartz_OB.log.txt +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/quartz_atomsk.cif +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/quartz_atomsk.log.txt +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/standard_test.inchi +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/xyz_files-mol.zip +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/output/xyz_files.log.txt +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/periodic_dmol3.outmol +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/quartz.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/quartz_err.xyz +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/test_data/standard_test.cdxml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/cli_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/converter_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/database_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/dist_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/file_io_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/logging_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/security_test.py +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/selenium/files/standard_test.cdxml +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/selenium/run.sh +0 -0
- {psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/tests/selenium/selenium_tests.py +0 -0
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uses: ./.github/workflows/job-test-python.yml
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test-gui:
|
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uses: ./.github/workflows/job-test-gui.yml
|
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# The commented out code below runs a code vulnerability scan on the
|
17
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# containerised app. This will not work on the free GitHub plan, since
|
18
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# for that plan code scanning is not supported for private repos - and
|
19
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# this is a private repo. There may be a work-around.
|
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#
|
21
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# NOTE: If you uncomment this job to use it you may wish to change the
|
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# 'needs' in the below 'tag-container-push' job from 'test-package'
|
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# to 'anchore-scan' if you want to make a release dependent on a successful
|
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# scan.
|
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#
|
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#anchore-scan:
|
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tag:
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container-push:
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needs: [tag]
|
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with:
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container_tag: ${{ needs.tag.outputs.container_tag }}
|
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publish-doc:
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needs: [tag]
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uses: ./.github/workflows/job-publish-doc.yml
|
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# Deploy to Kubernetes Job
|
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# Requires an environment, which must reflect the target environment as defined in the
|
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# GitHub repository: https://github.com/PSDI-UK/psdi-data-conversion/settings/environments
|
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# The downstream deploy job leverages on Environment specific secrets, which also must be defined
|
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deploy-stfc-staging-k8s:
|
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needs: [tag]
|
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uses: ./.github/workflows/job-deploy-k8s.yml # use the callable deploy job
|
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secrets: inherit # pass all secrets for the environment
|
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with:
|
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container_tag: ${{ needs.tag.outputs.container_tag }}
|
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environment: staging
|
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build:
|
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needs: [tag]
|
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name: Build distribution 📦
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runs-on: ubuntu-latest
|
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steps:
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- uses: actions/checkout@v4
|
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with:
|
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fetch-depth: 0
|
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persist-credentials: false
|
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- name: Set up Python
|
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uses: actions/setup-python@v5
|
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with:
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python-version: "3.x"
|
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- name: Install pypa/build
|
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run: >-
|
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python3 -m
|
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pip install
|
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build
|
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--user
|
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- name: Build a binary wheel and a source tarball
|
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run: python3 -m build
|
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- name: Store the distribution packages
|
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uses: actions/upload-artifact@v4
|
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with:
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name: python-package-distributions
|
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path: dist/
|
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|
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+
publish-to-testpypi:
|
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name: Publish Python 🐍 distribution 📦 to TestPyPI
|
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|
+
needs:
|
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|
+
- build
|
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|
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runs-on: ubuntu-latest
|
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|
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environment:
|
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name: testpypi
|
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url: https://test.pypi.org/p/psdi-data-conversion
|
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|
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permissions:
|
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|
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id-token: write # IMPORTANT: mandatory for trusted publishing
|
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|
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steps:
|
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|
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uses: actions/download-artifact@v4
|
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with:
|
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name: python-package-distributions
|
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path: dist/
|
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- name: Publish distribution 📦 to TestPyPI
|
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uses: pypa/gh-action-pypi-publish@release/v1
|
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with:
|
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repository-url: https://test.pypi.org/legacy/
|
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verbose: true
|
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|
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publish-to-pypi:
|
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name: >-
|
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Publish Python 🐍 distribution 📦 to PyPI
|
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needs:
|
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- publish-to-testpypi
|
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runs-on: ubuntu-latest
|
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environment:
|
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name: pypi
|
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url: https://pypi.org/p/psdi-data-conversion
|
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permissions:
|
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id-token: write # IMPORTANT: mandatory for trusted publishing
|
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|
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steps:
|
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|
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uses: actions/download-artifact@v4
|
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with:
|
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name: python-package-distributions
|
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|
+
path: dist/
|
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|
+
- name: Publish distribution 📦 to PyPI
|
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|
+
uses: pypa/gh-action-pypi-publish@release/v1
|
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|
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with:
|
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|
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verbose: true
|
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
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2
|
Name: psdi_data_conversion
|
3
|
-
Version: 0.0.
|
3
|
+
Version: 0.0.29
|
4
4
|
Summary: Chemistry file format conversion service, provided by PSDI
|
5
5
|
Project-URL: Homepage, https://psdidev2.azurewebsites.net/
|
6
6
|
Project-URL: Documentation, https://psdi-uk.github.io/psdi-data-conversion/
|
@@ -56,8 +56,11 @@ Changelog = "https://github.com/PSDI-UK/psdi-data-conversion/blob/main/CHANGELOG
|
|
56
56
|
Download = "https://github.com/PSDI-UK/psdi-data-conversion/releases/latest"
|
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|
|
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|
# Hatch-specific configuration
|
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|
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[tool.hatch]
|
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|
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[tool.hatch.version]
|
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|
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|
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[tool.hatch.version.raw-options]
|
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|
61
64
|
|
62
65
|
[tool.hatch.build]
|
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|
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|
@@ -1,59 +0,0 @@
|
|
1
|
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# Workflow for continuous integration tasks triggered on push to release
|
2
|
-
|
3
|
-
name: CI - Release
|
4
|
-
run-name: CI - Release
|
5
|
-
on:
|
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|
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workflow_dispatch:
|
7
|
-
push:
|
8
|
-
branches: ["release"]
|
9
|
-
|
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|
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jobs:
|
11
|
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test-python:
|
12
|
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uses: ./.github/workflows/job-test-python.yml
|
13
|
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test-gui:
|
14
|
-
uses: ./.github/workflows/job-test-gui.yml
|
15
|
-
|
16
|
-
# The commented out code below runs a code vulnerability scan on the
|
17
|
-
# containerised app. This will not work on the free GitHub plan, since
|
18
|
-
# for that plan code scanning is not supported for private repos - and
|
19
|
-
# this is a private repo. There may be a work-around.
|
20
|
-
#
|
21
|
-
# NOTE: If you uncomment this job to use it you may wish to change the
|
22
|
-
# 'needs' in the below 'tag-container-push' job from 'test-package'
|
23
|
-
# to 'anchore-scan' if you want to make a release dependent on a successful
|
24
|
-
# scan.
|
25
|
-
#
|
26
|
-
#anchore-scan:
|
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|
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# uses: ./.github/workflows/anchore-scan.yml
|
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# needs: [test-package, test-gui]
|
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|
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|
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tag:
|
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uses: ./.github/workflows/job-tag.yml
|
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needs: [test-python, test-gui]
|
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|
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container-push:
|
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|
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uses: ./.github/workflows/job-container-push.yml
|
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|
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needs: [tag]
|
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|
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with:
|
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container_tag: ${{ needs.tag.outputs.container_tag }}
|
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|
-
|
40
|
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publish-doc:
|
41
|
-
needs: [tag]
|
42
|
-
uses: ./.github/workflows/job-publish-doc.yml
|
43
|
-
|
44
|
-
# Deploy to Kubernetes Job
|
45
|
-
# Requires an environment, which must reflect the target environment as defined in the
|
46
|
-
# GitHub repository: https://github.com/PSDI-UK/psdi-data-conversion/settings/environments
|
47
|
-
# The downstream deploy job leverages on Environment specific secrets, which also must be defined
|
48
|
-
deploy-stfc-staging-k8s:
|
49
|
-
needs: [tag]
|
50
|
-
uses: ./.github/workflows/job-deploy-k8s.yml # use the callable deploy job
|
51
|
-
secrets: inherit # pass all secrets for the environment
|
52
|
-
with:
|
53
|
-
container_tag: ${{ needs.tag.outputs.container_tag }}
|
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|
-
environment: staging
|
55
|
-
|
56
|
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# Publish to PyPI - uncomment once ready for regular publishing
|
57
|
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# publish-pypi:
|
58
|
-
# needs: [tag]
|
59
|
-
# uses: ./.github/workflows/job-publish-pypi.yml
|
@@ -1,74 +0,0 @@
|
|
1
|
-
# Reusable workflow to upload a Python Package to PyPI
|
2
|
-
|
3
|
-
# For more information see: https://docs.github.com/en/actions/use-cases-and-examples/building-and-testing/building-and-testing-python#publishing-to-pypi
|
4
|
-
|
5
|
-
# This workflow uses actions that are not certified by GitHub.
|
6
|
-
# They are provided by a third-party and are governed by
|
7
|
-
# separate terms of service, privacy policy, and support
|
8
|
-
# documentation.
|
9
|
-
|
10
|
-
name: Job - Publish to PyPI
|
11
|
-
run-name: Publish to PyPI
|
12
|
-
|
13
|
-
on:
|
14
|
-
workflow_call:
|
15
|
-
workflow_dispatch:
|
16
|
-
|
17
|
-
permissions:
|
18
|
-
contents: read
|
19
|
-
|
20
|
-
jobs:
|
21
|
-
release-build:
|
22
|
-
runs-on: ubuntu-latest
|
23
|
-
|
24
|
-
steps:
|
25
|
-
- uses: actions/checkout@v4
|
26
|
-
|
27
|
-
- uses: actions/setup-python@v5
|
28
|
-
with:
|
29
|
-
python-version: "3.x"
|
30
|
-
|
31
|
-
- name: Build release distributions
|
32
|
-
run: |
|
33
|
-
# NOTE: put your own distribution build steps here.
|
34
|
-
python -m pip install build
|
35
|
-
python -m build
|
36
|
-
|
37
|
-
- name: Upload distributions
|
38
|
-
uses: actions/upload-artifact@v4
|
39
|
-
with:
|
40
|
-
name: release-dists
|
41
|
-
path: dist/
|
42
|
-
|
43
|
-
pypi-publish:
|
44
|
-
runs-on: ubuntu-latest
|
45
|
-
needs:
|
46
|
-
- release-build
|
47
|
-
permissions:
|
48
|
-
# IMPORTANT: this permission is mandatory for trusted publishing
|
49
|
-
id-token: write
|
50
|
-
|
51
|
-
# Dedicated environments with protections for publishing are strongly recommended.
|
52
|
-
# For more information, see: https://docs.github.com/en/actions/deployment/targeting-different-environments/using-environments-for-deployment#deployment-protection-rules
|
53
|
-
environment:
|
54
|
-
name: "Production"
|
55
|
-
# OPTIONAL: uncomment and update to include your PyPI project URL in the deployment status:
|
56
|
-
# url: https://pypi.org/p/psdi-data-conversion
|
57
|
-
#
|
58
|
-
# ALTERNATIVE: if your GitHub Release name is the PyPI project version string
|
59
|
-
# ALTERNATIVE: exactly, uncomment the following line instead:
|
60
|
-
url: https://pypi.org/project/psdi-data-conversion/${{ github.event.release.name }}
|
61
|
-
|
62
|
-
steps:
|
63
|
-
- name: Retrieve release distributions
|
64
|
-
uses: actions/download-artifact@v4
|
65
|
-
with:
|
66
|
-
name: release-dists
|
67
|
-
path: dist/
|
68
|
-
|
69
|
-
# This workflow uses Trustred Publishing to authenticate, which requires some setup on PyPI. For details, see:
|
70
|
-
# https://docs.github.com/en/actions/security-for-github-actions/security-hardening-your-deployments/configuring-openid-connect-in-pypi
|
71
|
-
- name: Publish release distributions to PyPI
|
72
|
-
uses: pypa/gh-action-pypi-publish@release/v1
|
73
|
-
with:
|
74
|
-
packages-dir: dist/
|
File without changes
|
File without changes
|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-feature.yml
RENAMED
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|
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|
File without changes
|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/ci-rc-hotfix.yml
RENAMED
File without changes
|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-anchore-scan.yml
RENAMED
File without changes
|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-container-push.yml
RENAMED
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-deploy-azure.yml
RENAMED
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-deploy-k8s.yml
RENAMED
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|
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-publish-doc.yml
RENAMED
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|
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-test-gui.yml
RENAMED
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/.github/workflows/job-test-python.yml
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|
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|
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|
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|
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/__init__.py
RENAMED
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|
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{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/linux/atomsk
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/linux/c2x
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/mac/atomsk
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/bin/mac/c2x
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/constants.py
RENAMED
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converter.py
RENAMED
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|
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|
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/base.py
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/converters/c2x.py
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|
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|
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|
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|
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/log_utility.py
RENAMED
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|
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|
{psdi_data_conversion-0.0.23 → psdi_data_conversion-0.0.29}/psdi_data_conversion/scripts/atomsk.sh
RENAMED
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|
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RENAMED
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RENAMED
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RENAMED
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