protspace 4.7.0__tar.gz → 4.7.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (218) hide show
  1. protspace-4.7.2/CHANGELOG.md +11117 -0
  2. {protspace-4.7.0 → protspace-4.7.2}/CLAUDE.md +4 -2
  3. protspace-4.7.2/Dockerfile +76 -0
  4. protspace-4.7.2/LICENSE +21 -0
  5. {protspace-4.7.0 → protspace-4.7.2}/PKG-INFO +12 -6
  6. {protspace-4.7.0 → protspace-4.7.2}/README.md +10 -4
  7. {protspace-4.7.0 → protspace-4.7.2}/docs/styling.md +51 -1
  8. protspace-4.7.2/docs/superpowers/specs/2026-07-13-cli-help-and-docs-refresh-design.md +145 -0
  9. protspace-4.7.2/package.json +8 -0
  10. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/README.md +1 -1
  11. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/pyproject.toml +3 -2
  12. {protspace-4.7.0 → protspace-4.7.2}/pyproject.toml +16 -12
  13. protspace-4.7.2/src/protspace/__init__.py +1 -0
  14. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/annotate.py +5 -7
  15. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/app.py +34 -8
  16. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/bundle.py +5 -7
  17. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/common_options.py +7 -1
  18. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/embed.py +3 -3
  19. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/prepare.py +4 -3
  20. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/project.py +17 -6
  21. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/serve.py +9 -3
  22. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/stats.py +24 -9
  23. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/style.py +3 -3
  24. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/transfer.py +52 -12
  25. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/utils/add_annotation_style.py +74 -0
  26. protspace-4.7.2/tests/test_style_warnings.py +223 -0
  27. protspace-4.7.0/.github/workflows/ci.yml +0 -53
  28. protspace-4.7.0/.github/workflows/publish.yml +0 -86
  29. protspace-4.7.0/.github/workflows/release.yml +0 -109
  30. protspace-4.7.0/CHANGELOG.md +0 -4503
  31. protspace-4.7.0/Dockerfile +0 -82
  32. protspace-4.7.0/LICENSE +0 -661
  33. protspace-4.7.0/src/protspace/__init__.py +0 -1
  34. protspace-4.7.0/uv.lock +0 -4278
  35. {protspace-4.7.0 → protspace-4.7.2}/.dockerignore +0 -0
  36. {protspace-4.7.0 → protspace-4.7.2}/.env.example +0 -0
  37. {protspace-4.7.0 → protspace-4.7.2}/.githooks/pre-commit +0 -0
  38. {protspace-4.7.0 → protspace-4.7.2}/.gitignore +0 -0
  39. {protspace-4.7.0 → protspace-4.7.2}/.python-version +0 -0
  40. {protspace-4.7.0 → protspace-4.7.2}/data/3FTx/3FTx.csv +0 -0
  41. {protspace-4.7.0 → protspace-4.7.2}/data/3FTx/3FTx_raw_data.xlsx +0 -0
  42. {protspace-4.7.0 → protspace-4.7.2}/data/3FTx/parquetbundle/3FTx_accession.csv +0 -0
  43. {protspace-4.7.0 → protspace-4.7.2}/data/3FTx/parquetbundle/3ftx_with_db_styled.parquetbundle +0 -0
  44. {protspace-4.7.0 → protspace-4.7.2}/data/3FTx/parquetbundle/styles.json +0 -0
  45. {protspace-4.7.0 → protspace-4.7.2}/data/Pla2g2/Pla2g2.csv +0 -0
  46. {protspace-4.7.0 → protspace-4.7.2}/data/Pla2g2/Pla2g2.fasta +0 -0
  47. {protspace-4.7.0 → protspace-4.7.2}/data/Pla2g2/Pla2g2_pdb.zip +0 -0
  48. {protspace-4.7.0 → protspace-4.7.2}/data/Pla2g2/protspace_files/Pla2g2.json +0 -0
  49. {protspace-4.7.0 → protspace-4.7.2}/data/Pla2g2/protspace_files/Pla2g2_customized.json +0 -0
  50. {protspace-4.7.0 → protspace-4.7.2}/data/Pla2g2/style.json +0 -0
  51. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/README.md +0 -0
  52. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/toxprot/rebuild_mature_fasta.py +0 -0
  53. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/toxprot/toxins.csv +0 -0
  54. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/toxprot/toxins.json +0 -0
  55. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/toxprot/toxins_full.fasta +0 -0
  56. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/toxprot/toxins_mature.fasta +0 -0
  57. {protspace-4.7.0 → protspace-4.7.2}/data/jmb_2025/toxprot/toxins_style.json +0 -0
  58. {protspace-4.7.0 → protspace-4.7.2}/data/toxins/data.parquetbundle +0 -0
  59. {protspace-4.7.0 → protspace-4.7.2}/docs/annotations.md +0 -0
  60. {protspace-4.7.0 → protspace-4.7.2}/docs/cli.md +0 -0
  61. {protspace-4.7.0 → protspace-4.7.2}/docs/protspace_example.png +0 -0
  62. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/plans/2026-04-30-toxprot-demo-regeneration.md +0 -0
  63. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/plans/2026-07-02-annotation-cluster-validity.md +0 -0
  64. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/plans/2026-07-08-annotation-encoding-v2-backend.md +0 -0
  65. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/plans/2026-07-08-annotation-encoding-v2-frontend.md +0 -0
  66. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/research/2026-06-29-usearch-vs-bruteforce.md +0 -0
  67. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/specs/2026-04-30-toxprot-demo-regeneration-design.md +0 -0
  68. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/specs/2026-06-11-eat-annotation-transfer-design.md +0 -0
  69. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/specs/2026-07-02-annotation-cluster-validity-design.md +0 -0
  70. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/specs/2026-07-04-eat-visualization-overlay-design.md +0 -0
  71. {protspace-4.7.0 → protspace-4.7.2}/docs/superpowers/specs/2026-07-08-annotation-encoding-redesign-design.md +0 -0
  72. {protspace-4.7.0 → protspace-4.7.2}/notebooks/ClickThrough_GenerateEmbeddings.ipynb +0 -0
  73. {protspace-4.7.0 → protspace-4.7.2}/notebooks/ProtSpace_Preparation.ipynb +0 -0
  74. {protspace-4.7.0 → protspace-4.7.2}/notebooks/ProtSpace_Transfer.ipynb +0 -0
  75. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/benchmarks/bench_knn.py +0 -0
  76. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/benchmarks/bench_memory.py +0 -0
  77. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/src/protlabel/__init__.py +0 -0
  78. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/src/protlabel/backends.py +0 -0
  79. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/src/protlabel/lookup.py +0 -0
  80. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/src/protlabel/reliability.py +0 -0
  81. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/src/protlabel/transfer.py +0 -0
  82. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/tests/test_protlabel_backends.py +0 -0
  83. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/tests/test_protlabel_boundary.py +0 -0
  84. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/tests/test_protlabel_lookup.py +0 -0
  85. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/tests/test_protlabel_reliability.py +0 -0
  86. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/tests/test_protlabel_transfer.py +0 -0
  87. {protspace-4.7.0 → protspace-4.7.2}/packages/protlabel/tests/test_protlabel_version.py +0 -0
  88. {protspace-4.7.0 → protspace-4.7.2}/scripts/count_h5_rows.py +0 -0
  89. {protspace-4.7.0 → protspace-4.7.2}/scripts/count_parquetbundle_entries.py +0 -0
  90. {protspace-4.7.0 → protspace-4.7.2}/scripts/download_clan_fastas.py +0 -0
  91. {protspace-4.7.0 → protspace-4.7.2}/scripts/generate_examples/datasets.toml +0 -0
  92. {protspace-4.7.0 → protspace-4.7.2}/scripts/generate_examples/generate.py +0 -0
  93. {protspace-4.7.0 → protspace-4.7.2}/scripts/generate_toxprot_demo.py +0 -0
  94. {protspace-4.7.0 → protspace-4.7.2}/scripts/inspect_bundle.py +0 -0
  95. {protspace-4.7.0 → protspace-4.7.2}/scripts/pfam_clans/README.md +0 -0
  96. {protspace-4.7.0 → protspace-4.7.2}/scripts/pfam_clans/create_pfam_clan_query.py +0 -0
  97. {protspace-4.7.0 → protspace-4.7.2}/scripts/pfam_clans/merge_h5_batches.py +0 -0
  98. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/analysis/__init__.py +0 -0
  99. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/analysis/classification.py +0 -0
  100. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/app.py +0 -0
  101. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/__init__.py +0 -0
  102. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/annotated_image.png +0 -0
  103. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/custom.css +0 -0
  104. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/help_content/__init__.py +0 -0
  105. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/help_content/help_faq.md +0 -0
  106. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/help_content/help_how_it_works.md +0 -0
  107. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/help_content/help_json.md +0 -0
  108. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/help_content/help_overview.md +0 -0
  109. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/assets/rostlab_logo.png +0 -0
  110. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/cli/__init__.py +0 -0
  111. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/core/__init__.py +0 -0
  112. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/core/config.py +0 -0
  113. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/core/constants.py +0 -0
  114. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/__init__.py +0 -0
  115. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/__init__.py +0 -0
  116. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/configuration.py +0 -0
  117. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/encoding.py +0 -0
  118. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/manager.py +0 -0
  119. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/merging.py +0 -0
  120. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/__init__.py +0 -0
  121. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/base_retriever.py +0 -0
  122. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/biocentral_retriever.py +0 -0
  123. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/cath_names.py +0 -0
  124. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/http_utils.py +0 -0
  125. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/interpro_retriever.py +0 -0
  126. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/taxonomy_retriever.py +0 -0
  127. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/ted_retriever.py +0 -0
  128. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/retrievers/uniprot_retriever.py +0 -0
  129. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/scores.py +0 -0
  130. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/transformers/__init__.py +0 -0
  131. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/transformers/interpro_transforms.py +0 -0
  132. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/transformers/transformer.py +0 -0
  133. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/annotations/transformers/uniprot_transforms.py +0 -0
  134. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/embedding/__init__.py +0 -0
  135. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/embedding/biocentral.py +0 -0
  136. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/__init__.py +0 -0
  137. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/bundle.py +0 -0
  138. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/fasta.py +0 -0
  139. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/formatters.py +0 -0
  140. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/predictions.py +0 -0
  141. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/settings_converter.py +0 -0
  142. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/io/writers.py +0 -0
  143. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/loaders/__init__.py +0 -0
  144. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/loaders/embedding_set.py +0 -0
  145. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/loaders/fasta.py +0 -0
  146. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/loaders/h5.py +0 -0
  147. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/loaders/query.py +0 -0
  148. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/loaders/similarity.py +0 -0
  149. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/parsers/__init__.py +0 -0
  150. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/parsers/uniprot_parser.py +0 -0
  151. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/processors/__init__.py +0 -0
  152. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/processors/base_processor.py +0 -0
  153. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/data/processors/pipeline.py +0 -0
  154. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/main.py +0 -0
  155. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/__init__.py +0 -0
  156. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/_sampling.py +0 -0
  157. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/annotation_select.py +0 -0
  158. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/base.py +0 -0
  159. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/carriage.py +0 -0
  160. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/cluster/__init__.py +0 -0
  161. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/cluster/kmeans_elbow.py +0 -0
  162. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/driver.py +0 -0
  163. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/metrics/__init__.py +0 -0
  164. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/metrics/annotation_validity.py +0 -0
  165. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/metrics/faithfulness.py +0 -0
  166. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/stats/metrics/validity.py +0 -0
  167. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/ui/__init__.py +0 -0
  168. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/ui/callbacks.py +0 -0
  169. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/ui/layout.py +0 -0
  170. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/ui/styles.py +0 -0
  171. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/utils/__init__.py +0 -0
  172. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/utils/arrow_reader.py +0 -0
  173. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/utils/constants.py +0 -0
  174. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/utils/reducers.py +0 -0
  175. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/visualization/__init__.py +0 -0
  176. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/visualization/molstar.py +0 -0
  177. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/visualization/plotting.py +0 -0
  178. {protspace-4.7.0 → protspace-4.7.2}/src/protspace/wsgi.py +0 -0
  179. {protspace-4.7.0 → protspace-4.7.2}/tests/README.md +0 -0
  180. {protspace-4.7.0 → protspace-4.7.2}/tests/__init__.py +0 -0
  181. {protspace-4.7.0 → protspace-4.7.2}/tests/test_annotation_encoding.py +0 -0
  182. {protspace-4.7.0 → protspace-4.7.2}/tests/test_annotation_manager.py +0 -0
  183. {protspace-4.7.0 → protspace-4.7.2}/tests/test_annotation_select.py +0 -0
  184. {protspace-4.7.0 → protspace-4.7.2}/tests/test_annotation_validity.py +0 -0
  185. {protspace-4.7.0 → protspace-4.7.2}/tests/test_base_data_processor.py +0 -0
  186. {protspace-4.7.0 → protspace-4.7.2}/tests/test_biocentral_embedder.py +0 -0
  187. {protspace-4.7.0 → protspace-4.7.2}/tests/test_biocentral_retriever.py +0 -0
  188. {protspace-4.7.0 → protspace-4.7.2}/tests/test_bundle_overlay.py +0 -0
  189. {protspace-4.7.0 → protspace-4.7.2}/tests/test_bundle_settings.py +0 -0
  190. {protspace-4.7.0 → protspace-4.7.2}/tests/test_bundle_version.py +0 -0
  191. {protspace-4.7.0 → protspace-4.7.2}/tests/test_cath_names.py +0 -0
  192. {protspace-4.7.0 → protspace-4.7.2}/tests/test_classification.py +0 -0
  193. {protspace-4.7.0 → protspace-4.7.2}/tests/test_config.py +0 -0
  194. {protspace-4.7.0 → protspace-4.7.2}/tests/test_config_validation.py +0 -0
  195. {protspace-4.7.0 → protspace-4.7.2}/tests/test_display_decode.py +0 -0
  196. {protspace-4.7.0 → protspace-4.7.2}/tests/test_encoding_e2e.py +0 -0
  197. {protspace-4.7.0 → protspace-4.7.2}/tests/test_fasta.py +0 -0
  198. {protspace-4.7.0 → protspace-4.7.2}/tests/test_formatters.py +0 -0
  199. {protspace-4.7.0 → protspace-4.7.2}/tests/test_h5_parse_identifier.py +0 -0
  200. {protspace-4.7.0 → protspace-4.7.2}/tests/test_interpro_annotation_retriever.py +0 -0
  201. {protspace-4.7.0 → protspace-4.7.2}/tests/test_output_combinations.py +0 -0
  202. {protspace-4.7.0 → protspace-4.7.2}/tests/test_pfam_clan.py +0 -0
  203. {protspace-4.7.0 → protspace-4.7.2}/tests/test_pipeline_utils.py +0 -0
  204. {protspace-4.7.0 → protspace-4.7.2}/tests/test_predictions_overlay.py +0 -0
  205. {protspace-4.7.0 → protspace-4.7.2}/tests/test_reducers.py +0 -0
  206. {protspace-4.7.0 → protspace-4.7.2}/tests/test_scores_ted.py +0 -0
  207. {protspace-4.7.0 → protspace-4.7.2}/tests/test_settings_converter.py +0 -0
  208. {protspace-4.7.0 → protspace-4.7.2}/tests/test_stats.py +0 -0
  209. {protspace-4.7.0 → protspace-4.7.2}/tests/test_stats_bundle.py +0 -0
  210. {protspace-4.7.0 → protspace-4.7.2}/tests/test_stats_carriage.py +0 -0
  211. {protspace-4.7.0 → protspace-4.7.2}/tests/test_stats_cli.py +0 -0
  212. {protspace-4.7.0 → protspace-4.7.2}/tests/test_taxonomy_annotation_retriever.py +0 -0
  213. {protspace-4.7.0 → protspace-4.7.2}/tests/test_ted_retriever.py +0 -0
  214. {protspace-4.7.0 → protspace-4.7.2}/tests/test_toxprot_demo.py +0 -0
  215. {protspace-4.7.0 → protspace-4.7.2}/tests/test_transfer_cli.py +0 -0
  216. {protspace-4.7.0 → protspace-4.7.2}/tests/test_transformer.py +0 -0
  217. {protspace-4.7.0 → protspace-4.7.2}/tests/test_uniprot_annotation_retriever.py +0 -0
  218. {protspace-4.7.0 → protspace-4.7.2}/tests/test_uniprot_parser_encoding.py +0 -0

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