protpy 1.3.0__tar.gz → 1.4.1__tar.gz

{protpy-1.3.0/protpy.egg-info → protpy-1.4.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: protpy
-Version: 1.3.0
+Version: 1.4.1
 Summary: Python package for generating various biochemical, physicochemical and structural descriptors/features of protein sequences.
 Author-email: AJ McKenna <amckenna41@qub.ac.uk>
 Maintainer-email: AJ McKenna <amckenna41@qub.ac.uk>
@@ -35,6 +35,7 @@ License-File: LICENSE
 Requires-Dist: aaindex>=1.2.0
 Requires-Dist: numpy>=2.4.4
 Requires-Dist: pandas>=3.0.2
+Requires-Dist: tqdm>=4.0.0
 Requires-Dist: varname>=0.15.1
 Provides-Extra: test
 Requires-Dist: pytest; extra == "test"
@@ -54,6 +55,7 @@ Dynamic: license-file
 [![pytest](https://github.com/amckenna41/protpy/workflows/Building%20and%20Testing/badge.svg)](https://github.com/amckenna41/protpy/actions?query=workflowBuilding%20and%20Testing)
 [![Platforms](https://img.shields.io/badge/platforms-linux%2C%20macOS%2C%20Windows-green)](https://pypi.org/project/protpy/)
 [![PythonV](https://img.shields.io/pypi/pyversions/protpy?logo=2)](https://pypi.org/project/protpy/)
+[![Documentation Status](https://readthedocs.org/projects/protpy/badge/?version=latest)](https://protpy.readthedocs.io/en/latest/?badge=latest)
 [![codecov](https://codecov.io/gh/amckenna41/protPy/graph/badge.svg?token=H508M9J13W)](https://codecov.io/gh/amckenna41/protPy)
 [![License: MIT](https://img.shields.io/badge/License-MIT-red.svg)](https://opensource.org/licenses/MIT)
 [![Issues](https://img.shields.io/github/issues/amckenna41/protpy)](https://github.com/amckenna41/protpy/issues)

{protpy-1.3.0 → protpy-1.4.1}/README.md

@@ -6,6 +6,7 @@
 [![pytest](https://github.com/amckenna41/protpy/workflows/Building%20and%20Testing/badge.svg)](https://github.com/amckenna41/protpy/actions?query=workflowBuilding%20and%20Testing)
 [![Platforms](https://img.shields.io/badge/platforms-linux%2C%20macOS%2C%20Windows-green)](https://pypi.org/project/protpy/)
 [![PythonV](https://img.shields.io/pypi/pyversions/protpy?logo=2)](https://pypi.org/project/protpy/)
+[![Documentation Status](https://readthedocs.org/projects/protpy/badge/?version=latest)](https://protpy.readthedocs.io/en/latest/?badge=latest)
 [![codecov](https://codecov.io/gh/amckenna41/protPy/graph/badge.svg?token=H508M9J13W)](https://codecov.io/gh/amckenna41/protPy)
 [![License: MIT](https://img.shields.io/badge/License-MIT-red.svg)](https://opensource.org/licenses/MIT)
 [![Issues](https://img.shields.io/github/issues/amckenna41/protpy)](https://github.com/amckenna41/protpy/issues)

{protpy-1.3.0 → protpy-1.4.1}/docs/conf.py

@@ -13,7 +13,7 @@ sys.path.insert(0, os.path.abspath('..'))
 project = 'protpy'
 copyright = '2026, AJ McKenna'
 author = 'AJ McKenna'
-release = '1.3.0'
+release = '1.4.1'
 
 # -- General configuration ---------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration

{protpy-1.3.0 → protpy-1.4.1}/protpy/__init__.py

@@ -4,6 +4,7 @@ from .conjoint_triad import *
 from .ctd import *
 from .sequence_order import *
 from .utils import get_descriptor_info, list_descriptors, print_descriptor_info
+from .encode import all_descriptors, encode_dataset, read_sequences_from_file
 
 #canonical amino acids available in the package
 amino_acids = ["A", "C", "D", "E", "F", "G", "H", "I", "K", "L", "M", "N", "P",
@@ -11,7 +12,7 @@ amino_acids = ["A", "C", "D", "E", "F", "G", "H", "I", "K", "L", "M", "N", "P",
 
 #protPy package metadata
 __name__ = 'protpy'
-__version__ = "1.3.0"
+__version__ = "1.4.1"
 __description__ = "Python package for generating various biochemical, physicochemical and structural descriptors/features of protein sequences."
 __author__ = 'AJ McKenna: https://github.com/amckenna41'
 __authorEmail__ = 'amckenna41@qub.ac.uk'
@@ -25,8 +26,8 @@ __keywords__ = ["bioinformatics", "protein engineering", "python", "pypi", "mach
                 "structural descriptors", "pySAR"]
 __test_suite__ = "tests"
 
-#list of all available descriptors in protPy
-all_descriptors = ["amino_acid_composition", "dipeptide_composition", "tripeptide_composition",
+#list of all available descriptor names in protPy
+descriptor_names = ["amino_acid_composition", "dipeptide_composition", "tripeptide_composition",
     "gravy", "aromaticity", "instability_index", "isoelectric_point", "molecular_weight",
     "charge_distribution", "hydrophobic_polar_charged_composition", "secondary_structure_propensity",
     "kmer_composition", "reduced_alphabet_composition", "motif_composition",