protein-quest 0.5.0__tar.gz → 0.5.1__tar.gz
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- {protein_quest-0.5.0 → protein_quest-0.5.1}/PKG-INFO +1 -1
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/__version__.py +1 -1
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/uniprot.py +7 -3
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_uniprot/test_search4interaction_partners.yaml +47 -49
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_uniprot/test_search4macromolecular_complexes.yaml +46 -46
- {protein_quest-0.5.0 → protein_quest-0.5.1}/.github/workflows/ci.yml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/.github/workflows/pages.yml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/.github/workflows/pypi-publish.yml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/.gitignore +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/.vscode/extensions.json +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/CITATION.cff +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/CODE_OF_CONDUCT.md +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/CONTRIBUTING.md +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/LICENSE +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/README.md +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/CONTRIBUTING.md +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/index.md +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/notebooks/.gitignore +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/notebooks/alphafold.ipynb +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/notebooks/index.md +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/notebooks/pdbe.ipynb +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/notebooks/uniprot.ipynb +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/docs/protein-quest-mcp.png +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/mkdocs.yml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/pyproject.toml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/__init__.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/alphafold/__init__.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/alphafold/confidence.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/alphafold/entry_summary.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/alphafold/fetch.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/cli.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/converter.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/emdb.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/filters.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/go.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/mcp_server.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/parallel.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/pdbe/__init__.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/pdbe/fetch.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/pdbe/io.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/py.typed +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/ss.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/taxonomy.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/src/protein_quest/utils.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/alphafold/AF-A1YPR0-F1-model_v4.pdb +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/alphafold/cassettes/test_fetch/test_fetch_many.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/alphafold/test_confidence.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/alphafold/test_entry_summary.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/alphafold/test_fetch.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_emdb/test_fetch.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_go/test_search_gene_ontology_term.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_taxonomy/test_search_taxon.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_taxonomy/test_search_taxon_by_id.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_uniprot/test_search4af.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_uniprot/test_search4emdb.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_uniprot/test_search4pdb.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/cassettes/test_uniprot/test_search4uniprot.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/fixtures/3JRS_B2A.cif.gz +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/pdbe/cassettes/test_fetch/test_fetch.yaml +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/pdbe/fixtures/2y29.cif +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/pdbe/test_fetch.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/pdbe/test_io.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_cli.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_converter.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_emdb.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_go.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_mcp.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_ss.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_taxonomy.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_uniprot.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/tests/test_utils.py +0 -0
- {protein_quest-0.5.0 → protein_quest-0.5.1}/uv.lock +0 -0
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: protein_quest
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Version: 0.5.
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Version: 0.5.1
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Summary: Search/retrieve/filter proteins and protein structures
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Project-URL: Homepage, https://github.com/haddocking/protein-quest
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Project-URL: Issues, https://github.com/haddocking/protein-quest/issues
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@@ -1,2 +1,2 @@
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__version__ = "0.5.
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__version__ = "0.5.1"
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"""The version of the package."""
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@@ -525,7 +525,9 @@ def _build_complex_sparql_query(uniprot_accs: Iterable[str], limit: int) -> str:
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?protein
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?cp_db
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?cp_comment
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(GROUP_CONCAT(
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(GROUP_CONCAT(
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DISTINCT STRAFTER(STR(?member), "http://purl.uniprot.org/uniprot/"); separator=","
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) AS ?complex_members)
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(COUNT(DISTINCT ?member) AS ?member_count)
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WHERE {
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# Input UniProt accessions
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"""
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select_clause = dedent("""\
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?protein ?cp_db ?cp_comment
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(GROUP_CONCAT(
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(GROUP_CONCAT(
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DISTINCT STRAFTER(STR(?member), "http://purl.uniprot.org/uniprot/"); separator=","
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) AS ?complex_members)
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""")
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where_clause = dedent("""
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# --- Complex Info ---
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complex_id = raw_result["cp_db"]["value"].split("/")[-1]
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complex_url = f"https://www.ebi.ac.uk/complexportal/complex/{complex_id}"
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complex_title = raw_result.get("cp_comment", {}).get("value", "")
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members =
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members = set(raw_result["complex_members"]["value"].split(","))
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results.append(
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ComplexPortalEntry(
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query_protein=query_protein,
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User-Agent:
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- sparqlwrapper 2.0.0 (rdflib.github.io/sparqlwrapper)
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method: GET
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uri: https://sparql.uniprot.org/sparql?query=%0A++++++++PREFIX+up%3A+%3Chttp%3A//purl.uniprot.org/core/%3E%0A++++++++PREFIX+taxon%3A+%3Chttp%3A//purl.uniprot.org/taxonomy/%3E%0A++++++++PREFIX+rdf%3A+%3Chttp%3A//www.w3.org/1999/02/22-rdf-syntax-ns%23%3E%0A++++++++PREFIX+rdfs%3A+%3Chttp%3A//www.w3.org/2000/01/rdf-schema%23%3E%0A++++++++PREFIX+skos%3A+%3Chttp%3A//www.w3.org/2004/02/skos/core%23%3E%0A++++++++PREFIX+GO%3A%3Chttp%3A//purl.obolibrary.org/obo/GO_%3E%0A%0A++++++++SELECT+%3Fprotein+%3Fcp_db+%3Fcp_comment%0A%28GROUP_CONCAT%
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uri: https://sparql.uniprot.org/sparql?query=%0A++++++++PREFIX+up%3A+%3Chttp%3A//purl.uniprot.org/core/%3E%0A++++++++PREFIX+taxon%3A+%3Chttp%3A//purl.uniprot.org/taxonomy/%3E%0A++++++++PREFIX+rdf%3A+%3Chttp%3A//www.w3.org/1999/02/22-rdf-syntax-ns%23%3E%0A++++++++PREFIX+rdfs%3A+%3Chttp%3A//www.w3.org/2000/01/rdf-schema%23%3E%0A++++++++PREFIX+skos%3A+%3Chttp%3A//www.w3.org/2004/02/skos/core%23%3E%0A++++++++PREFIX+GO%3A%3Chttp%3A//purl.obolibrary.org/obo/GO_%3E%0A%0A++++++++SELECT+%3Fprotein+%3Fcp_db+%3Fcp_comment%0A%28GROUP_CONCAT%28%0A++++DISTINCT+STRAFTER%28STR%28%3Fmember%29%2C+%22http%3A//purl.uniprot.org/uniprot/%22%29%3B+separator%3D%22%2C%22%0A%29+AS+%3Fcomplex_members%29%0A%0A++++++++WHERE+%7B%0A%0A++++++++%23+---+Protein+Selection+---%0A++++++++VALUES+%28%3Fac%29+%7B+%28%22P60709%22%29%7D%0A++++++++BIND+%28IRI%28CONCAT%28%22http%3A//purl.uniprot.org/uniprot/%22%2C%3Fac%29%29+AS+%3Fprotein%29%0A++++++++%3Fprotein+a+up%3AProtein+.%0A%0A%0A%23+---+Complex+Info+---%0A%3Fprotein+a+up%3AProtein+%3B%0A++++++++rdfs%3AseeAlso+%3Fcp_db+.%0A%3Fcp_db+up%3Adatabase+%3Chttp%3A//purl.uniprot.org/database/ComplexPortal%3E+.%0AOPTIONAL+%7B+%3Fcp_db+rdfs%3Acomment+%3Fcp_comment+.+%7D%0A%23+All+member+proteins+of+the+same+ComplexPortal+complex%0A%3Fmember+a+up%3AProtein+%3B%0Ardfs%3AseeAlso+%3Fcp_db+.%0A%0A%0A++++++++%7D%0A+++++++++GROUP+BY+%0A%3Fprotein+%3Fcp_db+%3Fcp_comment%0A%0A++++++++LIMIT+100%0A&format=json&output=json&results=json
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response:
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body:
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string: "{\n \"head\" : {\n \"vars\" : [\n \"protein\",\n \"cp_db\",\n
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: {\n \"type\" : \"literal\",\n \"value\" : \"Brain-specific
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1A-SMARCA2 variant\"\n
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\ \"value\" : \"
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\ \"value\" : \"O94805,P60709,Q969G3,P51531,Q12824,Q8TAQ2,Q92925,O14497\"\n
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\ }\n },\n {\n \"protein\" : {\n \"type\"
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: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1A-SMARCA4 variant\"\n
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\ \"value\" : \"O94805,Q12824,O14497,P51532,Q8TAQ2,Q969G3,Q92925,P60709\"\n
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1B-SMARCA2 variant\"\n
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\ \"value\" : \"P51531,O94805,Q8TAQ2,P60709,Q8NFD5,Q969G3,Q12824,Q92925\"\n
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1B-SMARCA4 variant\"\n
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\ \"value\" : \"Q96GM5,P60709,O96019,Q9BQE9,Q8WUZ0,Q8WUB8,P51532,Q969G3,Q92785,Q12824,Q92922,Q4VC05,O14497\"\n
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\ \"value\" : \"Q8WUZ0,Q9H8M2,P51531,P60709,Q4VC05,Q6AI39,Q15532,Q9BQE9,O96019,Q96GM5,Q92922\"\n
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\ \"value\" : \"Q6AI39,Q4VC05,Q92922,Q9BQE9,P51532,Q9H8M2,O96019,Q96GM5,P60709,Q15532,Q8WUZ0\"\n
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\ \"value\" : \"Q9H8M2,Q92922,Q96GM5,O96019,Q9NZM4,Q15532,Q4VC05,P51531,Q9BQE9,P60709,Q8WUZ0\"\n
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ATP-dependent chromatin remodeling complex, ACTL6A-BICRA-SMARCA4 variant\"\n
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\ \"value\" : \"
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\ \"value\" : \"Q4VC05,Q15532,Q8WUZ0,P51532,Q96GM5,P60709,Q9BQE9,Q9NZM4,Q9H8M2,Q92922,O96019\"\n
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ATP-dependent chromatin remodeling complex, ACTL6B-BICRAL-SMARCA2 variant\"\n
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\ \"value\" : \"
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\ \"value\" : \"Q8WUZ0,Q96GM5,Q9BQE9,Q15532,P60709,Q92922,P51531,O94805,Q9H8M2,Q6AI39,Q4VC05\"\n
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\ \"value\" : \"Q9BQE9,Q4VC05,Q9H8M2,P60709,Q8WUZ0,Q92922,P51532,O94805,Q15532,Q96GM5,Q6AI39\"\n
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@@ -111,7 +111,7 @@ interactions:
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\ \"value\" : \"Q96GM5,Q9BQE9,Q8WUZ0,Q9H8M2,Q92922,P51531,Q15532,P60709,Q4VC05,O94805,Q9NZM4\"\n
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@@ -119,7 +119,7 @@ interactions:
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ATP-dependent chromatin remodeling complex, ACTL6B-BICRA-SMARCA4 variant\"\n
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\ \"value\" : \"P51532,Q8WUZ0,Q4VC05,Q9BQE9,Q96GM5,Q15532,P60709,Q9NZM4,O94805,Q92922,Q9H8M2\"\n
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@@ -127,7 +127,7 @@ interactions:
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: \"literal\",\n \"value\" : \"O96019,Q92925,Q92922,Q6STE5,Q12824,Q96GM5,Q8TAQ2,O14497,P51531,P60709,Q969G3,Q92784\"\n
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"Q6STE5,P51532,Q92784,O14497,Q8TAQ2,Q96GM5,P60709,Q92922,O96019,Q969G3,Q12824,Q92925\"\n
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@@ -143,7 +143,7 @@ interactions:
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SWI/SNF ATP-dependent chromatin remodeling complex, ACTL6A-ARID1B-SMARCA2
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"P60709,Q96GM5,Q8NFD5,Q6STE5,Q8TAQ2,Q92784,Q92922,Q92925,O96019,Q12824,P51531,Q969G3\"\n
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@@ -151,7 +151,7 @@ interactions:
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SWI/SNF ATP-dependent chromatin remodeling complex, ACTL6A-ARID1B-SMARCA4
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"Q96GM5,Q8TAQ2,Q8NFD5,Q6STE5,Q12824,P51532,Q92925,Q969G3,Q92922,O96019,P60709,Q92784\"\n
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@@ -159,7 +159,7 @@ interactions:
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variant\"\n },\n \"complex_members\" : {\n \"type\"
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"O94805,Q92922,Q969G3,Q92784,P60709,P51531,Q92925,Q96GM5,Q8TAQ2,Q6STE5,O14497,Q12824\"\n
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@@ -167,7 +167,7 @@ interactions:
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SWI/SNF ATP-dependent chromatin remodeling complex, ACTL6B-ARID1A-SMARCA4
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variant\"\n },\n \"complex_members\" : {\n \"type\"
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"Q969G3,Q6STE5,O14497,Q8TAQ2,Q92925,P51532,Q12824,Q96GM5,Q92922,O94805,P60709,Q92784\"\n
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@@ -175,7 +175,7 @@ interactions:
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variant\"\n },\n \"complex_members\" : {\n \"type\"
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"Q92922,Q92925,P51531,P60709,O94805,Q8TAQ2,Q92784,Q8NFD5,Q969G3,Q96GM5,Q6STE5,Q12824\"\n
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@@ -183,7 +183,7 @@ interactions:
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SWI/SNF ATP-dependent chromatin remodeling complex, ACTL6B-ARID1B-SMARCA4
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variant\"\n },\n \"complex_members\" : {\n \"type\"
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: \"literal\",\n \"value\" : \"
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: \"literal\",\n \"value\" : \"Q8TAQ2,Q92784,Q92925,Q92922,Q8NFD5,P60709,Q969G3,Q12824,Q6STE5,O94805,P51532,Q96GM5\"\n
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\ }\n },\n {\n \"protein\" : {\n \"type\"
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@@ -191,7 +191,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neural progenitor-specific
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1A-SMARCA2 variant\"\n
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\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
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\ \"value\" : \"
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\ \"value\" : \"Q12824,Q8WUB8,Q96GM5,P60709,Q969G3,P51531,Q8TAQ2,Q6STE5,O14497,Q92922,O96019\"\n
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\ }\n },\n {\n \"protein\" : {\n \"type\"
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@@ -199,7 +199,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neural progenitor-specific
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1A-SMARCA4 variant\"\n
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\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
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\ \"value\" : \"
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\ \"value\" : \"P60709,Q8WUB8,Q96GM5,Q969G3,Q6STE5,O14497,Q8TAQ2,O96019,P51532,Q92922,Q12824\"\n
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\ }\n },\n {\n \"protein\" : {\n \"type\"
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@@ -207,7 +207,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neural progenitor-specific
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1B-SMARCA2 variant\"\n
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\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
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\ \"value\" : \"
|
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\ \"value\" : \"Q92922,Q969G3,Q8NFD5,Q8WUB8,P60709,O96019,P51531,Q8TAQ2,Q12824,Q6STE5,Q96GM5\"\n
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\ }\n },\n {\n \"protein\" : {\n \"type\"
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: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
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|
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@@ -215,7 +215,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neural progenitor-specific
|
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1B-SMARCA4 variant\"\n
|
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\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
|
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\ \"value\" : \"
|
|
218
|
+
\ \"value\" : \"Q8TAQ2,O96019,Q92922,Q96GM5,P60709,P51532,Q6STE5,Q8WUB8,Q8NFD5,Q12824,Q969G3\"\n
|
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\ }\n },\n {\n \"protein\" : {\n \"type\"
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: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
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\ },\n \"cp_db\" : {\n \"type\" : \"uri\",\n \"value\"
|
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@@ -223,7 +223,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neuron-specific
|
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|
SWI/SNF ATP-dependent chromatin remodeling complex, ARID1A-SMARCA2 variant\"\n
|
|
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225
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\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
|
|
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|
-
\ \"value\" : \"
|
|
226
|
+
\ \"value\" : \"P51531,Q92784,Q6STE5,O94805,Q96GM5,Q92782,Q92922,Q969G3,Q12824,Q8TAQ2,P60709,O14497\"\n
|
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\ }\n },\n {\n \"protein\" : {\n \"type\"
|
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: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
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\ },\n \"cp_db\" : {\n \"type\" : \"uri\",\n \"value\"
|
|
@@ -231,7 +231,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neuron-specific
|
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SWI/SNF ATP-dependent chromatin remodeling complex, ARID1A-SMARCA4 variant\"\n
|
|
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\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
|
|
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|
-
\ \"value\" : \"
|
|
234
|
+
\ \"value\" : \"Q92922,P51532,Q96GM5,Q92784,Q6STE5,Q92782,O94805,P60709,Q969G3,O14497,Q8TAQ2,Q12824\"\n
|
|
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\ }\n },\n {\n \"protein\" : {\n \"type\"
|
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: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
|
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\ },\n \"cp_db\" : {\n \"type\" : \"uri\",\n \"value\"
|
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@@ -239,7 +239,7 @@ interactions:
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neuron-specific
|
|
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240
|
SWI/SNF ATP-dependent chromatin remodeling complex, ARID1B-SMARCA2 variant\"\n
|
|
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241
|
\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
|
|
242
|
-
\ \"value\" : \"
|
|
242
|
+
\ \"value\" : \"Q8NFD5,O94805,Q6STE5,Q92922,P51531,Q8TAQ2,Q12824,Q92782,Q92784,Q96GM5,P60709,Q969G3\"\n
|
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\ }\n },\n {\n \"protein\" : {\n \"type\"
|
|
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: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
|
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\ },\n \"cp_db\" : {\n \"type\" : \"uri\",\n \"value\"
|
|
@@ -247,14 +247,14 @@ interactions:
|
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: {\n \"type\" : \"literal\",\n \"value\" : \"Neuron-specific
|
|
248
248
|
SWI/SNF ATP-dependent chromatin remodeling complex, ARID1B-SMARCA4 variant\"\n
|
|
249
249
|
\ },\n \"complex_members\" : {\n \"type\" : \"literal\",\n
|
|
250
|
-
\ \"value\" : \"
|
|
250
|
+
\ \"value\" : \"O94805,P60709,Q92782,Q8NFD5,Q12824,Q8TAQ2,Q96GM5,Q92784,P51532,Q6STE5,Q92922,Q969G3\"\n
|
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|
\ }\n },\n {\n \"protein\" : {\n \"type\"
|
|
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|
: \"uri\",\n \"value\" : \"http://purl.uniprot.org/uniprot/P60709\"\n
|
|
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|
\ },\n \"cp_db\" : {\n \"type\" : \"uri\",\n \"value\"
|
|
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254
|
: \"http://purl.uniprot.org/complexportal/CPX-978\"\n },\n \"cp_comment\"
|
|
255
255
|
: {\n \"type\" : \"literal\",\n \"value\" : \"NuA4 histone
|
|
256
256
|
acetyltransferase complex\"\n },\n \"complex_members\" : {\n
|
|
257
|
-
\ \"type\" : \"literal\",\n \"value\" : \"
|
|
257
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+
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SWI/SNF ATP-dependent chromatin remodeling complex, ACTL6A variant\"\n },\n
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: \"Q96GM5,Q12824,Q969G3,Q68CP9,Q92922,Q8TAQ2,P60709,Q8WUB8,Q92925,P51532,Q9NPI1,Q86U86,O96019\"\n
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: \"Q92922,Q96GM5,Q969G3,O94805,Q12824,Q9NPI1,Q86U86,P60709,Q68CP9,Q8TAQ2,Q92925,Q8WUB8,P51532\"\n
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chromatin remodeling complex, ACTL6A-ARID1B-SMARCA4 variant\"\n },\n
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: \"P60709,Q8TAQ2,O96019,Q969G3,Q92922,Q92925,Q12824,P51532,Q8NFD5,Q6STE5,Q96GM5\"\n
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: \"O14497,P60709,Q92925,Q8TAQ2,Q6STE5,Q969G3,Q92922,Q12824,Q96GM5,P51531,O94805\"\n
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chromatin remodeling complex, ACTL6B-ARID1B-SMARCA4 variant\"\n },\n
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