process-bigraph 1.3.0__tar.gz → 1.3.1__tar.gz

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Files changed (35) hide show
  1. {process_bigraph-1.3.0/process_bigraph.egg-info → process_bigraph-1.3.1}/PKG-INFO +1 -1
  2. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/types/process.py +7 -3
  3. {process_bigraph-1.3.0 → process_bigraph-1.3.1/process_bigraph.egg-info}/PKG-INFO +1 -1
  4. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/pyproject.toml +1 -1
  5. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/AUTHORS.md +0 -0
  6. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/LICENSE +0 -0
  7. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/README.md +0 -0
  8. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/__init__.py +0 -0
  9. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/bundle.py +0 -0
  10. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/composite.py +0 -0
  11. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/emitter.py +0 -0
  12. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/experiments/__init__.py +0 -0
  13. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/experiments/minimal_gillespie.py +0 -0
  14. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/nextflow.py +0 -0
  15. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/plumbing.py +0 -0
  16. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/__init__.py +0 -0
  17. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/dynamic_structure.py +0 -0
  18. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/examples.py +0 -0
  19. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/growth_division.py +0 -0
  20. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/math_expression.py +0 -0
  21. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/parameter_scan.py +0 -0
  22. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/processes/reaction.py +0 -0
  23. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/protocols/__init__.py +0 -0
  24. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/protocols/parallel.py +0 -0
  25. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/protocols/rest.py +0 -0
  26. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/protocols/socket.py +0 -0
  27. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/run.py +0 -0
  28. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/run_step.py +0 -0
  29. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/types/__init__.py +0 -0
  30. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/units.py +0 -0
  31. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph.egg-info/SOURCES.txt +0 -0
  32. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph.egg-info/dependency_links.txt +0 -0
  33. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph.egg-info/requires.txt +0 -0
  34. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph.egg-info/top_level.txt +0 -0
  35. {process_bigraph-1.3.0 → process_bigraph-1.3.1}/setup.cfg +0 -0
{process_bigraph-1.3.0/process_bigraph.egg-info → process_bigraph-1.3.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: process-bigraph
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- Version: 1.3.0
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+ Version: 1.3.1
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  Summary: protocol and execution for compositional systems biology
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  Requires-Python: >=3.11
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  Description-Content-Type: text/markdown
{process_bigraph-1.3.0 → process_bigraph-1.3.1}/process_bigraph/types/process.py RENAMED
@@ -323,10 +323,14 @@ def realize(core, schema: SharedProcess, state, path=()):
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  if not hasattr(instance, 'core') or instance.core is None:
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  instance.core = core
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- # Restore process-internal RandomState if a checkpoint captured one.
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+ # Restore process-internal RandomState if a checkpoint captured
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+ # one. Cross-gen daughter loads should strip ``rng_state`` from
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+ # the saved bundle before construction (so the daughter starts
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+ # fresh from a freshly-seeded process); mid-tick checkpoints
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+ # leave it in for bit-for-bit continuation.
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  rng_state = state.get('rng_state')
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- if rng_state and hasattr(instance, 'random_state') and isinstance(
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- instance.random_state, np.random.RandomState):
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+ if (rng_state and hasattr(instance, 'random_state')
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+ and isinstance(instance.random_state, np.random.RandomState)):
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  try:
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  instance.random_state.set_state((
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  rng_state['alg'],
{process_bigraph-1.3.0 → process_bigraph-1.3.1/process_bigraph.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: process-bigraph
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- Version: 1.3.0
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+ Version: 1.3.1
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  Summary: protocol and execution for compositional systems biology
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  Requires-Python: >=3.11
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  Description-Content-Type: text/markdown
{process_bigraph-1.3.0 → process_bigraph-1.3.1}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "process-bigraph"
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- version = "1.3.0"
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+ version = "1.3.1"
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  description = "protocol and execution for compositional systems biology"
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  readme = "README.md"
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  requires-python = ">=3.11"
{process_bigraph-1.3.0 → process_bigraph-1.3.1}/LICENSE RENAMED
File without changes