process-bigraph 1.1.7__tar.gz → 1.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. {process_bigraph-1.1.7/process_bigraph.egg-info → process_bigraph-1.2.2}/PKG-INFO +2 -6
  2. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/composite.py +385 -175
  3. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/emitter.py +34 -5
  4. {process_bigraph-1.1.7 → process_bigraph-1.2.2/process_bigraph.egg-info}/PKG-INFO +2 -6
  5. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph.egg-info/SOURCES.txt +0 -11
  6. process_bigraph-1.2.2/process_bigraph.egg-info/requires.txt +6 -0
  7. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/pyproject.toml +13 -6
  8. process_bigraph-1.1.7/.github/workflows/notebook_to_html.yml +0 -43
  9. process_bigraph-1.1.7/.github/workflows/pytest.yml +0 -29
  10. process_bigraph-1.1.7/.gitignore +0 -18
  11. process_bigraph-1.1.7/CLA.md +0 -113
  12. process_bigraph-1.1.7/CODE_OF_CONDUCT.md +0 -137
  13. process_bigraph-1.1.7/CONTRIBUTING.md +0 -44
  14. process_bigraph-1.1.7/doc/_static/process-bigraph.png +0 -0
  15. process_bigraph-1.1.7/notebooks/process-bigraphs.ipynb +0 -739
  16. process_bigraph-1.1.7/notebooks/visualize_processes.ipynb +0 -237
  17. process_bigraph-1.1.7/process_bigraph.egg-info/requires.txt +0 -10
  18. process_bigraph-1.1.7/pytest.ini +0 -4
  19. process_bigraph-1.1.7/release.sh +0 -41
  20. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/AUTHORS.md +0 -0
  21. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/LICENSE +0 -0
  22. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/README.md +0 -0
  23. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/__init__.py +0 -0
  24. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/bundle.py +0 -0
  25. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/experiments/__init__.py +0 -0
  26. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/experiments/minimal_gillespie.py +0 -0
  27. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/nextflow.py +0 -0
  28. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/plumbing.py +0 -0
  29. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/__init__.py +0 -0
  30. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/dynamic_structure.py +0 -0
  31. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/examples.py +0 -0
  32. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/growth_division.py +0 -0
  33. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/math_expression.py +0 -0
  34. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/parameter_scan.py +0 -0
  35. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/processes/reaction.py +0 -0
  36. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/protocols/__init__.py +0 -0
  37. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/protocols/parallel.py +0 -0
  38. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/protocols/rest.py +0 -0
  39. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/protocols/socket.py +0 -0
  40. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/run.py +0 -0
  41. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/run_step.py +0 -0
  42. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/types/__init__.py +0 -0
  43. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/types/process.py +0 -0
  44. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph/units.py +0 -0
  45. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph.egg-info/dependency_links.txt +0 -0
  46. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/process_bigraph.egg-info/top_level.txt +0 -0
  47. {process_bigraph-1.1.7 → process_bigraph-1.2.2}/setup.cfg +0 -0
{process_bigraph-1.1.7/process_bigraph.egg-info → process_bigraph-1.2.2}/PKG-INFO RENAMED
@@ -1,21 +1,17 @@
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  Metadata-Version: 2.4
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  Name: process-bigraph
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- Version: 1.1.7
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+ Version: 1.2.2
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  Summary: protocol and execution for compositional systems biology
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  Requires-Python: >=3.11
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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  License-File: AUTHORS.md
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- Requires-Dist: bigraph-schema
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- Requires-Dist: ipdb>=0.13.13
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+ Requires-Dist: bigraph-schema>=1.2.3
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  Requires-Dist: matplotlib
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  Requires-Dist: pint>=0.24.4
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  Requires-Dist: scipy>=1.8
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  Requires-Dist: pandas
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  Requires-Dist: sympy
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- Requires-Dist: ipykernel
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- Requires-Dist: jupyter
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- Requires-Dist: notebook
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  Dynamic: license-file
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  # Process-Bigraph