process-bigraph 1.0.0__tar.gz → 1.0.4__tar.gz

{process_bigraph-1.0.0/process_bigraph.egg-info → process_bigraph-1.0.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: process-bigraph
-Version: 1.0.0
+Version: 1.0.4
 Summary: protocol and execution for compositional systems biology
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown

process_bigraph-1.0.4/process_bigraph/types/__init__.py

@@ -0,0 +1,2 @@
+from process_bigraph.types.process import ProcessLink, StepLink, CompositeLink, realize, default
+

process_bigraph-1.0.4/process_bigraph/types/process.py

@@ -0,0 +1,76 @@
+import typing
+from plum import dispatch
+from dataclasses import dataclass, is_dataclass, field
+
+from bigraph_schema.schema import Node, Empty, Float, Wires, Link, Schema
+from bigraph_schema.methods import resolve, realize, realize_link, default, default_link
+
+
+@dataclass(kw_only=True)
+class StepLink(Link):
+    pass
+
+
+def float_default(value):
+    def float_factory():
+        return Float(_default=value)
+    return float_factory
+
+
+@dataclass(kw_only=True)
+class ProcessLink(Link):
+    interval: Float = field(default_factory=float_default(1.0))
+
+
+@dataclass(kw_only=True)
+class Bridge(Node):
+    inputs: Wires = field(default_factory=Wires)
+    outputs: Wires = field(default_factory=Wires)
+
+
+@dataclass(kw_only=True)
+class Interface(Node):
+    inputs: Schema = field(default_factory=Schema)
+    outputs: Schema = field(default_factory=Schema)
+
+
+@dataclass(kw_only=True)
+class CompositeLink(ProcessLink):
+    schema: Schema = field(default_factory=Schema)
+    state: Node = field(default_factory=Node)
+    interface: Interface = field(default_factory=Interface)
+    bridge: Bridge = field(default_factory=Bridge)
+
+    
+@default.dispatch
+def default(schema: ProcessLink):
+    link = default_link(schema)
+
+    link['interval'] = default(
+        schema.interval)
+
+    return link
+
+
+@realize.dispatch
+def realize(core, schema: ProcessLink, state, path=()):
+    link_schema, link_state, merges = realize_link(core, schema, state, path=path)
+
+    _, link_state['interval'], _ = realize(
+        core,
+        link_schema.interval,
+        state.get('interval'),
+        path+('interval',))
+
+    return link_schema, link_state, merges
+
+
+def register_types(core):
+    core.register_types({
+        'step': StepLink,
+        'process': ProcessLink,
+        'interface': Interface,
+        'bridge': Bridge,
+        'composite': CompositeLink})
+
+    return core

{process_bigraph-1.0.0 → process_bigraph-1.0.4/process_bigraph.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: process-bigraph
-Version: 1.0.0
+Version: 1.0.4
 Summary: protocol and execution for compositional systems biology
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown

{process_bigraph-1.0.0 → process_bigraph-1.0.4}/process_bigraph.egg-info/SOURCES.txt

@@ -21,4 +21,6 @@ process_bigraph/processes/parameter_scan.py
 process_bigraph/protocols/__init__.py
 process_bigraph/protocols/parallel.py
 process_bigraph/protocols/rest.py
-process_bigraph/protocols/socket.py
+process_bigraph/protocols/socket.py
+process_bigraph/types/__init__.py
+process_bigraph/types/process.py

{process_bigraph-1.0.0 → process_bigraph-1.0.4}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "process-bigraph"
-version = "1.0.0"
+version = "1.0.4"
 description = "protocol and execution for compositional systems biology"
 readme = "README.md"
 requires-python = ">=3.11"
@@ -17,6 +17,7 @@ packages = [
     "process_bigraph.processes",
     "process_bigraph.protocols",
     "process_bigraph.experiments",
+    "process_bigraph.types",
 ]
 
 # [tool.uv.sources]