process-bigraph 0.0.38__tar.gz → 0.0.39__tar.gz

{process-bigraph-0.0.38 → process-bigraph-0.0.39}/.gitignore

@@ -11,3 +11,5 @@ venv/
 
 process_bigraph.egg-info/
 out/
+.devenv*
+devenv.lock

{process-bigraph-0.0.38/process_bigraph.egg-info → process-bigraph-0.0.39}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: process-bigraph
-Version: 0.0.38
+Version: 0.0.39
 Home-page: https://github.com/vivarium-collective/process-bigraph
 Author: Ryan Spangler, Eran Agmon
 Author-email: ryan.spangler@gmail.com, agmon.eran@gmail.com

{process-bigraph-0.0.38 → process-bigraph-0.0.39}/process_bigraph/composite.py

@@ -379,6 +379,14 @@ class Defer:
             self.defer.get(),
             self.args)
 
+def match_star_path(path, star_path):
+    compare = zip(path, star_path)
+    for element, star_element in compare:
+        if element != star_element:
+            if star_element != "*":
+                return False
+    return True
+
 
 class Composite(Process):
     """
@@ -487,13 +495,16 @@ class Composite(Process):
 
     def build_step_network(self):
         self.step_triggers = {}
+        self.star_triggers = {}
         for step_path, step in self.step_paths.items():
             step_triggers = find_step_triggers(
                 step_path, step)
             self.step_triggers = merge_collections(
                 self.step_triggers,
                 step_triggers)
-
+        for trigger in self.step_triggers:
+            if "*" in trigger:
+                self.star_triggers[trigger] = self.step_triggers[trigger]
         self.steps_run = set([])
 
         self.step_dependencies, self.node_dependencies = build_step_network(
@@ -571,6 +582,12 @@ class Composite(Process):
             'process_bigraph.composite.Step')
 
 
+    def clean_front(self, state):
+        self.find_instance_paths(state)
+
+        # import ipdb; ipdb.set_trace()
+
+
     def inputs(self):
         return self.process_schema.get('inputs', {})
 
@@ -756,8 +773,7 @@ class Composite(Process):
                     self.bridge_updates.append(
                         bridge_update)
 
-        self.find_instance_paths(
-            self.state)
+        self.clean_front(self.state)
 
         return update_paths
 
@@ -896,6 +912,10 @@ class Composite(Process):
             paths = explode_path(update_path)
             for path in paths:
                 step_paths = self.step_triggers.get(path, [])
+                if self.star_triggers:
+                    for star_trigger, star_steps in self.star_triggers.items():
+                        if match_star_path(path, star_trigger):
+                            step_paths.extend(star_steps)
                 for step_path in step_paths:
                     if step_path is not None and step_path not in self.steps_run:
                         steps_to_run.append(step_path)
@@ -931,5 +951,3 @@ class Composite(Process):
         self.bridge_updates = []
 
         return updates
-
-

{process-bigraph-0.0.38 → process-bigraph-0.0.39}/process_bigraph/tests.py

@@ -7,7 +7,7 @@ import random
 from bigraph_schema import default
 from process_bigraph import register_types
 
-from process_bigraph.composite import Process, Step, Composite, merge_collections
+from process_bigraph.composite import Process, Step, Composite, merge_collections, match_star_path
 
 from process_bigraph.processes.growth_division import grow_divide_agent
 from process_bigraph.process_types import ProcessTypes
@@ -875,6 +875,10 @@ def test_stochastic_deterministic_composite(core):
     # TODO make the demo for a hybrid stochastic/deterministic simulator
     pass
 
+def test_match_star_path(core):
+    assert match_star_path(["first", "list", "test"], ["first", "*", "test"])
+    assert not match_star_path(["first", "list", "tent"], ["first", "*", "test"])
+    assert match_star_path(["first", "list", "test"], ["first", "list", "test"])
 
 if __name__ == '__main__':
     core = ProcessTypes()
@@ -900,3 +904,4 @@ if __name__ == '__main__':
     test_merge_schema(core)
     test_grow_divide(core)
     test_star_update(core)
+    test_match_star_path(core)

{process-bigraph-0.0.38 → process-bigraph-0.0.39/process_bigraph.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: process-bigraph
-Version: 0.0.38
+Version: 0.0.39
 Home-page: https://github.com/vivarium-collective/process-bigraph
 Author: Ryan Spangler, Eran Agmon
 Author-email: ryan.spangler@gmail.com, agmon.eran@gmail.com

{process-bigraph-0.0.38 → process-bigraph-0.0.39}/process_bigraph.egg-info/SOURCES.txt

@@ -5,6 +5,7 @@ CODE_OF_CONDUCT.md
 CONTRIBUTING.md
 LICENSE
 README.md
+pyproject.toml
 pytest.ini
 release.sh
 setup.py

{process-bigraph-0.0.38 → process-bigraph-0.0.39}/process_bigraph.egg-info/requires.txt

@@ -1,5 +1,3 @@
 bigraph-schema
-numpy
-pytest
-orjson
 matplotlib
+pytest

process-bigraph-0.0.39/pyproject.toml

@@ -0,0 +1,19 @@
+[project]
+name = "process-bigraph"
+version = "0.0.39"
+description = ""
+readme = "README.md"
+requires-python = "==3.12.9"
+dependencies = [
+    "bigraph-schema",
+    "matplotlib",
+    "pytest"
+]
+
+[tool.setuptools]
+packages = [
+    "process_bigraph"
+]
+
+[tool.uv.sources]
+bigraph-schema = { path = "../bigraph-schema", editable = true }

{process-bigraph-0.0.38 → process-bigraph-0.0.39}/setup.py

@@ -2,7 +2,7 @@ import re
 from setuptools import setup, find_packages
 
 
-VERSION = '0.0.38'
+VERSION = '0.0.39'
 
 
 with open("README.md", "r") as readme: