process-bigraph 0.0.33__tar.gz → 0.0.34__tar.gz

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Files changed (22) hide show
  1. {process-bigraph-0.0.33/process_bigraph.egg-info → process-bigraph-0.0.34}/PKG-INFO +6 -1
  2. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/emitter.py +9 -3
  3. {process-bigraph-0.0.33 → process-bigraph-0.0.34/process_bigraph.egg-info}/PKG-INFO +6 -1
  4. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/setup.py +1 -1
  5. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/AUTHORS.md +0 -0
  6. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/LICENSE +0 -0
  7. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/README.md +0 -0
  8. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/__init__.py +0 -0
  9. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/composite.py +0 -0
  10. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/experiments/__init__.py +0 -0
  11. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/experiments/minimal_gillespie.py +0 -0
  12. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/process_types.py +0 -0
  13. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/processes/__init__.py +0 -0
  14. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/processes/growth_division.py +0 -0
  15. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/processes/parameter_scan.py +0 -0
  16. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/protocols.py +0 -0
  17. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph/tests.py +0 -0
  18. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph.egg-info/SOURCES.txt +0 -0
  19. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph.egg-info/dependency_links.txt +0 -0
  20. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph.egg-info/requires.txt +0 -0
  21. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/process_bigraph.egg-info/top_level.txt +0 -0
  22. {process-bigraph-0.0.33 → process-bigraph-0.0.34}/setup.cfg +0 -0
@@ -1,9 +1,12 @@
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  Metadata-Version: 2.1
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  Name: process-bigraph
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- Version: 0.0.33
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+ Version: 0.0.34
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+ Summary: UNKNOWN
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  Home-page: https://github.com/vivarium-collective/process-bigraph
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  Author: Ryan Spangler, Eran Agmon
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  Author-email: ryan.spangler@gmail.com, agmon.eran@gmail.com
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+ License: UNKNOWN
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+ Platform: UNKNOWN
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  Classifier: Development Status :: 3 - Alpha
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  Classifier: Intended Audience :: Developers
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  Classifier: License :: OSI Approved :: MIT License
@@ -70,3 +73,5 @@ diagraph of a whole-cell E. coli model.
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  ## License
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  Bigraph-schema is open-source software released under the [Apache 2 License](https://github.com/vivarium-collective/process-bigraph/blob/main/LICENSE).
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+
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+
@@ -234,19 +234,25 @@ class RAMEmitter(Emitter):
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  return {}
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- def query(self, query=None):
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+ def query(self, query=None, schema=None):
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  """
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  Query the history of the emitter.
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  :param query: a list of paths to query from the history. If None, the entire history is returned.
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  :return: results of the query in a list
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  """
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+ schema = schema or self.inputs()
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  if isinstance(query, list):
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  results = []
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  for t in self.history:
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  result = {}
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  for path in query:
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- element = get_path(t, path)
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- result = set_path(result, path, element)
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+ _, state = self.core.slice(
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+ schema=schema,
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+ state=t,
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+ path=path)
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+
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+ # element = get_path(t, path)
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+ result = set_path(result, path, state)
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  results.append(result)
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  # element = get_path(self.history, path)
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  # result = set_path(result, path, element)
@@ -1,9 +1,12 @@
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  Metadata-Version: 2.1
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  Name: process-bigraph
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- Version: 0.0.33
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+ Version: 0.0.34
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+ Summary: UNKNOWN
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  Home-page: https://github.com/vivarium-collective/process-bigraph
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  Author: Ryan Spangler, Eran Agmon
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  Author-email: ryan.spangler@gmail.com, agmon.eran@gmail.com
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+ License: UNKNOWN
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+ Platform: UNKNOWN
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  Classifier: Development Status :: 3 - Alpha
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  Classifier: Intended Audience :: Developers
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  Classifier: License :: OSI Approved :: MIT License
@@ -70,3 +73,5 @@ diagraph of a whole-cell E. coli model.
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  ## License
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  Bigraph-schema is open-source software released under the [Apache 2 License](https://github.com/vivarium-collective/process-bigraph/blob/main/LICENSE).
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+
@@ -2,7 +2,7 @@ import re
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  from setuptools import setup, find_packages
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- VERSION = '0.0.33'
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+ VERSION = '0.0.34'
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  with open("README.md", "r") as readme: