process-bigraph 0.0.22__tar.gz → 0.0.24__tar.gz

{process-bigraph-0.0.22/process_bigraph.egg-info → process-bigraph-0.0.24}/PKG-INFO

@@ -1,9 +1,12 @@
 Metadata-Version: 2.1
 Name: process-bigraph
-Version: 0.0.22
+Version: 0.0.24
+Summary: UNKNOWN
 Home-page: https://github.com/vivarium-collective/process-bigraph
 Author: Ryan Spangler, Eran Agmon
 Author-email: ryan.spangler@gmail.com, agmon.eran@gmail.com
+License: UNKNOWN
+Platform: UNKNOWN
 Classifier: Development Status :: 3 - Alpha
 Classifier: Intended Audience :: Developers
 Classifier: License :: OSI Approved :: MIT License
@@ -70,3 +73,5 @@ diagraph of a whole-cell E. coli model.
 ## License
 
 Bigraph-schema is open-source software released under the [Apache 2 License](https://github.com/vivarium-collective/process-bigraph/blob/main/LICENSE).
+
+

process-bigraph-0.0.24/process_bigraph/__init__.py

@@ -0,0 +1,48 @@
+import pprint
+from bigraph_schema.registry import deep_merge, default
+from process_bigraph.processes import register_processes
+from process_bigraph.composite import Process, Step, Composite, ProcessTypes, interval_time_precision
+
+
+pretty = pprint.PrettyPrinter(indent=2)
+
+
+def pp(x):
+    """Print ``x`` in a pretty format."""
+    pretty.pprint(x)
+
+
+def pf(x):
+    """Format ``x`` for display."""
+    return pretty.pformat(x)
+
+
+def register_types(core):
+    core.register('default 1', {
+        '_inherit': 'float',
+        '_default': 1.0})
+
+    core.register('species_dependent_process', {
+        '_inherit': ['process'],
+        '_inputs': {
+            'species': {
+                '_type': 'array',
+                '_data': 'float'}},
+        '_outputs': {
+            'species': {
+                '_type': 'array',
+                '_data': 'float'}}})
+
+    core.register('ode_config', {
+        'stoichiometry': {
+            '_type': 'array',
+            '_data': 'integer'},
+        'rates': 'map[float]',
+        'species': 'map[float]'})
+
+    core = register_processes(
+        core)
+
+    return core
+
+