procela-analysis 0.1.0__tar.gz

procela_analysis-0.1.0/AUTHORS.txt

@@ -0,0 +1,56 @@
+# Procela Analysis Authors
+
+Project Lead
+============
+Kinson Vernet <kinson.vernet@gmail.com> (0009-0009-7535-3357)
+  - Project architecture
+  - Analysis core engine
+  - Memory reader, frames and metrics
+  - Mechanism profiler and ecology
+  - Policy stability
+  - Regime detector and transitions
+  - Report audit
+  - Visualization
+
+
+Core Contributors
+=================
+[Core team formation in progress]
+
+
+Domain Experts
+==============
+[Domain specializations to be established]
+
+
+Advisors
+========
+[Academic/industry advisory board pending]
+
+
+Emeritus Contributors
+=====================
+[No former contributors yet]
+
+
+Acknowledgments
+===============
+[Formal acknowledgments to be added]
+
+
+---
+NOTES:
+- This structure reflects Procela's architectural core and rigor
+- Empty sections denote intentional design, not oversight
+- Contributors will be added as the project evolves
+- Contact: To be established
+
+# Last updated: 2026-05-24
+# Version: 0.1.0 (core foundation)
+
+
+---
+# Contact Protocol
+# For technical issues: GitHub Issues
+# For research collaboration: Email lead maintainer
+# For security concerns: See SECURITY.md

procela_analysis-0.1.0/LICENSE

@@ -0,0 +1,210 @@
+Copyright 2026 Procela analysis / Kinson Vernet
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
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+
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procela_analysis-0.1.0/PKG-INFO

@@ -0,0 +1,137 @@
+Metadata-Version: 2.4
+Name: procela-analysis
+Version: 0.1.0
+Summary: Procela analysis tools for epistemic simulation audit
+Author-email: Kinson Vernet <kinson.vernet@gmail.com>
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://analysis.procela.org
+Project-URL: Documentation, https://docs.procela.org/analysis/
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: AUTHORS.txt
+Requires-Dist: procela==1.0.2
+Requires-Dist: numpy>=1.26.0
+Requires-Dist: pandas>=2.1.0
+Requires-Dist: matplotlib>=3.8.0
+Requires-Dist: plotly>=5.18.0
+Provides-Extra: dev
+Requires-Dist: pytest>=7.4; extra == "dev"
+Requires-Dist: pytest-cov>=4.1; extra == "dev"
+Requires-Dist: pre-commit>=3.6; extra == "dev"
+Requires-Dist: black==24.1.0; extra == "dev"
+Requires-Dist: ruff==0.4.4; extra == "dev"
+Requires-Dist: isort==7.0.0; extra == "dev"
+Requires-Dist: mypy>=1.10; extra == "dev"
+Requires-Dist: pydocstyle>=6.3.0; extra == "dev"
+Provides-Extra: docs
+Requires-Dist: mkdocs<2.0,>=1.5; extra == "docs"
+Requires-Dist: mkdocs-material>=9.5.0; extra == "docs"
+Requires-Dist: mkdocstrings[python]>=0.24.0; extra == "docs"
+Requires-Dist: mkdocs-autorefs>=1.0.0; extra == "docs"
+Requires-Dist: mkdocs-jupyter>=0.24.0; extra == "docs"
+Requires-Dist: mkdocs-git-revision-date-localized-plugin>=1.2.0; extra == "docs"
+Requires-Dist: mkdocs-mermaid2-plugin>=1.0.0; extra == "docs"
+Dynamic: license-file
+
+# Procela Analysis
+
+<div align="center">
+
+**Analysis and audit tools for Procela simulations**
+
+[![PyPI version](https://img.shields.io/pypi/v/procela-analysis.svg)](https://pypi.org/project/procela-analysis/)
+[![PyPI version](https://img.shields.io/pypi/v/procela.svg)](https://pypi.org/project/procela/)
+[![Python 3.10+](https://img.shields.io/badge/python-3.10+-blue.svg)](https://www.python.org/downloads/)
+[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](LICENSE)
+[![Documentation](https://img.shields.io/badge/docs-procela.org-green.svg)](https://docs.procela.org)
+[![CI](https://github.com/kvernet/procela-analysis/actions/workflows/ci.yaml/badge.svg)](https://github.com/kvernet/procela-analysis/actions/workflows/ci.yaml)
+
+</div>
+
+## Overview
+
+Procela Analysis converts [Procela](https://github.com/kvernet/procela) simulation memory into structured
+DataFrames and provides a suite of analytical tools for understanding
+how competing mechanisms behave, when regimes shift, and whether
+governance interventions succeed.
+
+- **MemoryReader**: extract hypotheses, resolutions, and errors from
+  Procela variables as pandas DataFrames
+- **MechanismProfiler**: per-mechanism accuracy curves, falsifiability
+  scores, and redundancy detection
+- **MechanismEcology**: population-level analysis — dominance curves,
+  niche overlap, extinction events, diversity indices, rank turnover
+- **RegimeDetector**: unsupervised detection of structural breaks in
+  mechanism error patterns
+- **TransitionAnalyzer**: characterize what changes at regime boundaries
+- **PolicyStability**: compare alternative resolution policies without
+  simulating counterfactual trajectories
+- **Epistemic signals**: rolling error, coverage, fragility,
+  disagreement index, confidence spread
+- **AuditReport**: self-contained interactive HTML report for
+  publication supplementary materials
+- **Visualization**: publication-ready matplotlib plots for all metrics
+
+## Installation
+
+```bash
+pip install procela-analysis
+```
+
+## Quick Start
+
+```python
+from procela import Executive, Variable, RangeDomain, WeightedVotingPolicy
+from procela_analysis import MemoryReader, MechanismEcology, AuditReport
+
+# Run a Procela simulation
+X = Variable("X", RangeDomain(0, 100), policy=WeightedVotingPolicy())
+# ... add mechanisms, run simulation ...
+
+# Read memory
+reader = MemoryReader(X)
+hypotheses = reader.hypotheses()
+resolutions = reader.resolutions()
+errors = reader.errors()
+
+# Analyze mechanism competition
+ecology = MechanismEcology(hypotheses, errors)
+dominance = ecology.dominance_curve("X")
+extinctions = ecology.extinction_events("X", threshold=0.05)
+
+# Generate an audit report
+report = AuditReport(hypotheses, resolutions, errors)
+report.generate("audit.html")
+```
+
+## Development
+
+```bash
+git clone https://github.com/kvernet/procela-analysis.git
+cd procela-analysis
+python -m venv .venv
+source .venv/bin/activate
+make dev-install
+make pre-commit
+```
+
+# Citation
+
+If you use Procela Analysis in your research, please cite:
+
+```bibtex
+@software{procela_2026,
+    title={Procela: Epistemic Governance in Mechanistic Simulations Under Structural Uncertainty},
+    author={Kinson Vernet},
+    year={2026},
+    eprint={2604.00675},
+    archivePrefix={arXiv},
+    primaryClass={physics.comp-ph},
+    url={https://arxiv.org/abs/2604.00675},
+}
+```
+
+## License
+
+Apache 2.0 — see [LICENSE](https://github.com/kvernet/procela-analysis).

procela_analysis-0.1.0/README.md

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+# Procela Analysis
+
+<div align="center">
+
+**Analysis and audit tools for Procela simulations**
+
+[![PyPI version](https://img.shields.io/pypi/v/procela-analysis.svg)](https://pypi.org/project/procela-analysis/)
+[![PyPI version](https://img.shields.io/pypi/v/procela.svg)](https://pypi.org/project/procela/)
+[![Python 3.10+](https://img.shields.io/badge/python-3.10+-blue.svg)](https://www.python.org/downloads/)
+[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](LICENSE)
+[![Documentation](https://img.shields.io/badge/docs-procela.org-green.svg)](https://docs.procela.org)
+[![CI](https://github.com/kvernet/procela-analysis/actions/workflows/ci.yaml/badge.svg)](https://github.com/kvernet/procela-analysis/actions/workflows/ci.yaml)
+
+</div>
+
+## Overview
+
+Procela Analysis converts [Procela](https://github.com/kvernet/procela) simulation memory into structured
+DataFrames and provides a suite of analytical tools for understanding
+how competing mechanisms behave, when regimes shift, and whether
+governance interventions succeed.
+
+- **MemoryReader**: extract hypotheses, resolutions, and errors from
+  Procela variables as pandas DataFrames
+- **MechanismProfiler**: per-mechanism accuracy curves, falsifiability
+  scores, and redundancy detection
+- **MechanismEcology**: population-level analysis — dominance curves,
+  niche overlap, extinction events, diversity indices, rank turnover
+- **RegimeDetector**: unsupervised detection of structural breaks in
+  mechanism error patterns
+- **TransitionAnalyzer**: characterize what changes at regime boundaries
+- **PolicyStability**: compare alternative resolution policies without
+  simulating counterfactual trajectories
+- **Epistemic signals**: rolling error, coverage, fragility,
+  disagreement index, confidence spread
+- **AuditReport**: self-contained interactive HTML report for
+  publication supplementary materials
+- **Visualization**: publication-ready matplotlib plots for all metrics
+
+## Installation
+
+```bash
+pip install procela-analysis
+```
+
+## Quick Start
+
+```python
+from procela import Executive, Variable, RangeDomain, WeightedVotingPolicy
+from procela_analysis import MemoryReader, MechanismEcology, AuditReport
+
+# Run a Procela simulation
+X = Variable("X", RangeDomain(0, 100), policy=WeightedVotingPolicy())
+# ... add mechanisms, run simulation ...
+
+# Read memory
+reader = MemoryReader(X)
+hypotheses = reader.hypotheses()
+resolutions = reader.resolutions()
+errors = reader.errors()
+
+# Analyze mechanism competition
+ecology = MechanismEcology(hypotheses, errors)
+dominance = ecology.dominance_curve("X")
+extinctions = ecology.extinction_events("X", threshold=0.05)
+
+# Generate an audit report
+report = AuditReport(hypotheses, resolutions, errors)
+report.generate("audit.html")
+```
+
+## Development
+
+```bash
+git clone https://github.com/kvernet/procela-analysis.git
+cd procela-analysis
+python -m venv .venv
+source .venv/bin/activate
+make dev-install
+make pre-commit
+```
+
+# Citation
+
+If you use Procela Analysis in your research, please cite:
+
+```bibtex
+@software{procela_2026,
+    title={Procela: Epistemic Governance in Mechanistic Simulations Under Structural Uncertainty},
+    author={Kinson Vernet},
+    year={2026},
+    eprint={2604.00675},
+    archivePrefix={arXiv},
+    primaryClass={physics.comp-ph},
+    url={https://arxiv.org/abs/2604.00675},
+}
+```
+
+## License
+
+Apache 2.0 — see [LICENSE](https://github.com/kvernet/procela-analysis).

procela_analysis-0.1.0/pyproject.toml

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+[build-system]
+requires = ["setuptools>=77.0", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "procela-analysis"
+version = "0.1.0"
+description = "Procela analysis tools for epistemic simulation audit"
+authors = [
+    { name = "Kinson Vernet", email = "kinson.vernet@gmail.com" }
+]
+readme = "README.md"
+license = "Apache-2.0"
+requires-python = ">=3.10"
+
+dependencies = [
+    "procela==1.0.2",
+    "numpy>=1.26.0",
+    "pandas>=2.1.0",
+    "matplotlib>=3.8.0",
+    "plotly>=5.18.0",
+]
+
+[project.urls]
+Homepage = "https://analysis.procela.org"
+Documentation = "https://docs.procela.org/analysis/"
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=7.4",
+    "pytest-cov>=4.1",
+    "pre-commit>=3.6",
+    "black==24.1.0",
+    "ruff==0.4.4",
+    "isort==7.0.0",
+    "mypy>=1.10",
+    "pydocstyle>=6.3.0",
+]
+docs = [
+    "mkdocs>=1.5,<2.0",
+    "mkdocs-material>=9.5.0",
+    "mkdocstrings[python]>=0.24.0",
+    "mkdocs-autorefs>=1.0.0",
+    "mkdocs-jupyter>=0.24.0",
+    "mkdocs-git-revision-date-localized-plugin>=1.2.0",
+    "mkdocs-mermaid2-plugin>=1.0.0",
+]
+
+[tool.setuptools]
+package-dir = {"" = "src"}
+
+[tool.setuptools.packages.find]
+where = ["src"]
+include = ["procela_analysis*"]
+
+[tool.black]
+line-length = 88
+target-version = ["py310"]
+
+[tool.isort]
+profile = "black"
+line_length = 88
+known_first_party = ["procela_analysis"]
+
+[tool.ruff]
+line-length = 88
+target-version = "py310"
+
+[tool.ruff.lint]
+select = ["E", "F", "I"]
+
+[tool.ruff.lint.isort]
+known-first-party = ["procela_analysis"]
+
+[tool.ruff.format]
+quote-style = "double"
+
+[tool.mypy]
+python_version = "3.12"
+warn_return_any = true
+warn_unused_configs = true
+disallow_untyped_defs = true
+disallow_incomplete_defs = true
+check_untyped_defs = true
+warn_redundant_casts = true
+warn_unused_ignores = true
+no_implicit_optional = true
+strict_equality = true
+ignore_missing_imports = true
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+python_files = ["test_*.py", "*_test.py"]
+python_classes = ["Test*"]
+python_functions = ["test_*"]
+addopts = [
+    "--strict-markers",
+    "--strict-config",
+    "-v",
+    "--durations=10",
+    "--cov=procela_analysis",
+    "--cov-report=term-missing",
+    "--cov-report=html",
+    "--cov-report=xml",
+]
+
+[tool.coverage.run]
+source = ["src"]
+omit = [
+    "tests/*",
+    "src/procela_analysis/**/__pycache__/*",
+    "src/procela_analysis/reports/*",
+    "src/procela_analysis/viz/*",
+]
+
+[tool.coverage.report]
+exclude_lines = [
+    "pragma: no cover",
+    "def __repr__",
+    "if self.debug:",
+    "if settings.DEBUG",
+    "raise AssertionError",
+    "raise NotImplementedError",
+    "if 0:",
+    "if __name__ == .__main__.:",
+    "class .*\\bProtocol\\):",
+    "@(abc\\.)?abstractmethod",
+]

procela_analysis-0.1.0/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+