primo-stitch 0.2.0__tar.gz

primo_stitch-0.2.0/LICENSE

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primo_stitch-0.2.0/NOTICE

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+PRIMO: Panoramic Reconstruction with Integrated Microscopy-Specific Optimization
+Copyright 2026 Gleb Nikolaev, Savelii Shashkov, Dmitriy Korshunov,
+Andrey Krylov, and Alexander Khvostikov.
+
+This product is licensed under the Apache License, Version 2.0.
+A copy of the License is provided in the LICENSE file and at
+http://www.apache.org/licenses/LICENSE-2.0
+
+This product bundles third-party software under separate open-source
+licenses (Apache-2.0, MIT). See THIRD_PARTY_LICENSES.md for details.

primo_stitch-0.2.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: primo-stitch
+Version: 0.2.0
+Summary: PRIMO: Panoramic Reconstruction with Integrated Microscopy-Specific Optimization
+Author-email: Gleb Nikolaev <nikolaevgv@my.msu.ru>, Savelii Shashkov <s02230302@gse.cs.msu.ru>, Dmitriy Korshunov <d.korshunov@ginras.ru>, Andrey Krylov <kryl@cs.msu.ru>, Alexander Khvostikov <khvostikov@cs.msu.ru>
+Maintainer-email: Alexander Khvostikov <khvostikov@cs.msu.ru>
+License-Expression: Apache-2.0
+Requires-Python: <3.15,>=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+License-File: THIRD_PARTY_LICENSES.md
+Requires-Dist: numpy>=1.24
+Requires-Dist: scipy
+Requires-Dist: tifffile
+Requires-Dist: imagecodecs>=2025.3.30
+Requires-Dist: matplotlib
+Requires-Dist: psutil>=5.9
+Requires-Dist: tqdm
+Requires-Dist: opencv-python
+Requires-Dist: pillow
+Requires-Dist: scikit-image
+Requires-Dist: loguru
+Requires-Dist: yacs
+Requires-Dist: huggingface_hub
+Requires-Dist: safetensors
+Requires-Dist: kornia<0.9,>=0.8.2
+Requires-Dist: einops
+Requires-Dist: torch<2.11,>=2.1
+Requires-Dist: torchvision<0.26,>=0.16
+Provides-Extra: dev
+Requires-Dist: pytest; extra == "dev"
+Requires-Dist: pytest-cov; extra == "dev"
+Dynamic: license-file
+
+# PRIMO: Panoramic Reconstruction with Integrated Microscopy-Specific Optimization
+
+Python library and command-line tool for stitching a set of overlapping tiles
+into a single 2D panorama.
+
+## Installation
+
+```bash
+pip install primo-stitch
+```
+
+- Python 3.10–3.14.
+- If you use a GPU, make sure you have a CUDA-enabled PyTorch
+  ([pytorch.org](https://pytorch.org)).
+- Model weights are downloaded on the first run — internet access is required.
+
+## Command-line usage
+
+`primo-stitch` is the main entry point.
+
+```bash
+# minimal — stitch a folder of tiles into a panorama
+primo-stitch --tile_dir path/to/tiles --output_file panorama.jpg
+
+# advanced
+primo-stitch \
+  --tile_dir path/to/tiles \
+  --output_file panorama.png \
+  --matcher "efficient loftr" \
+  --device cuda:0 \
+  --blending_mode full \
+  --inference_size 0.5 \
+  --batch_size 8 \
+  --logfile run.log
+```
+
+### Options
+
+| Flag | Default | Description |
+|---|---|---|
+| `--tile_dir` | *(required)* | Directory with the input tiles |
+| `--output_file` | `panorama.jpg` | Output panorama path (extension may be adjusted, e.g. `.png` when alpha is saved) |
+| `--cache_dir` | `.cache/` | Directory for intermediate results (created automatically, cleaned up after the run) |
+| `--matcher` | `xfeat` | `xfeat` \| `efficient loftr` \| `loftr` |
+| `--device` | `cpu` | `cpu`, `cuda`, `cuda:0`, ... |
+| `--blending_mode` | `full` | `collage` — fast paste-over, no correction; `mosaic` — photocorrection + hard seams, no blending; `full` — photocorrection + seams + multiband blending |
+| `--inference_size` | `0.3` | Matcher input scale relative to the original (`0.25`, `0.5`, `1`, ...) |
+| `--batch_size` | `1` | Matcher batch size (higher = faster, more memory) |
+| `--save_alpha_channel` / `--no-save_alpha_channel` | off | Save the transparency channel; forces `.png` output in `full` mode |
+| `--logfile` | *(none)* | Write a debug log to this file |
+
+## Python API
+
+```python
+from primo import Matcher, Stitcher
+
+matcher = Matcher(
+    model='xfeat',            # 'xfeat' | 'efficient loftr' | 'loftr'
+    device='cuda:0',          # or 'cpu'
+    inference_size=0.5,
+    batch_size=8,
+)
+
+# the alignment device is taken from the matcher
+stitcher = Stitcher(
+    matcher,
+    blending_mode='full',     # 'collage' | 'mosaic' | 'full'
+)
+
+stitcher.stitch(
+    input_dir='path/to/tiles',
+    output_file='panorama.jpg',
+)
+```
+
+`Matcher` and `Stitcher` expose additional keyword arguments (alignment,
+photometric correction, blending) — see their signatures for the full set.
+
+## Authors
+
+- Gleb Nikolaev — Lomonosov Moscow State University
+- Savelii Shashkov — Lomonosov Moscow State University
+- Dmitriy Korshunov — Geological Institute of the Russian Academy of Sciences
+- Andrey Krylov — Lomonosov Moscow State University
+- Alexander Khvostikov (corresponding author) — Lomonosov Moscow State University
+
+## Citation
+
+A paper describing PRIMO is currently under review; full citation details
+(venue, year, DOI) will be added once it is published. Until then, please
+credit the authors:
+
+```bibtex
+@unpublished{primo,
+  title  = {PRIMO: Panoramic Reconstruction with Integrated Microscopy-Specific Optimization},
+  author = {Nikolaev, Gleb and Shashkov, Savelii and Korshunov, Dmitriy and Krylov, Andrey and Khvostikov, Alexander},
+  year   = {2026},
+  note   = {Manuscript under review}
+}
+```
+
+## License
+
+[Apache-2.0](LICENSE); bundled third-party components — see
+[THIRD_PARTY_LICENSES.md](THIRD_PARTY_LICENSES.md).

primo_stitch-0.2.0/README.md

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+# PRIMO: Panoramic Reconstruction with Integrated Microscopy-Specific Optimization
+
+Python library and command-line tool for stitching a set of overlapping tiles
+into a single 2D panorama.
+
+## Installation
+
+```bash
+pip install primo-stitch
+```
+
+- Python 3.10–3.14.
+- If you use a GPU, make sure you have a CUDA-enabled PyTorch
+  ([pytorch.org](https://pytorch.org)).
+- Model weights are downloaded on the first run — internet access is required.
+
+## Command-line usage
+
+`primo-stitch` is the main entry point.
+
+```bash
+# minimal — stitch a folder of tiles into a panorama
+primo-stitch --tile_dir path/to/tiles --output_file panorama.jpg
+
+# advanced
+primo-stitch \
+  --tile_dir path/to/tiles \
+  --output_file panorama.png \
+  --matcher "efficient loftr" \
+  --device cuda:0 \
+  --blending_mode full \
+  --inference_size 0.5 \
+  --batch_size 8 \
+  --logfile run.log
+```
+
+### Options
+
+| Flag | Default | Description |
+|---|---|---|
+| `--tile_dir` | *(required)* | Directory with the input tiles |
+| `--output_file` | `panorama.jpg` | Output panorama path (extension may be adjusted, e.g. `.png` when alpha is saved) |
+| `--cache_dir` | `.cache/` | Directory for intermediate results (created automatically, cleaned up after the run) |
+| `--matcher` | `xfeat` | `xfeat` \| `efficient loftr` \| `loftr` |
+| `--device` | `cpu` | `cpu`, `cuda`, `cuda:0`, ... |
+| `--blending_mode` | `full` | `collage` — fast paste-over, no correction; `mosaic` — photocorrection + hard seams, no blending; `full` — photocorrection + seams + multiband blending |
+| `--inference_size` | `0.3` | Matcher input scale relative to the original (`0.25`, `0.5`, `1`, ...) |
+| `--batch_size` | `1` | Matcher batch size (higher = faster, more memory) |
+| `--save_alpha_channel` / `--no-save_alpha_channel` | off | Save the transparency channel; forces `.png` output in `full` mode |
+| `--logfile` | *(none)* | Write a debug log to this file |
+
+## Python API
+
+```python
+from primo import Matcher, Stitcher
+
+matcher = Matcher(
+    model='xfeat',            # 'xfeat' | 'efficient loftr' | 'loftr'
+    device='cuda:0',          # or 'cpu'
+    inference_size=0.5,
+    batch_size=8,
+)
+
+# the alignment device is taken from the matcher
+stitcher = Stitcher(
+    matcher,
+    blending_mode='full',     # 'collage' | 'mosaic' | 'full'
+)
+
+stitcher.stitch(
+    input_dir='path/to/tiles',
+    output_file='panorama.jpg',
+)
+```
+
+`Matcher` and `Stitcher` expose additional keyword arguments (alignment,
+photometric correction, blending) — see their signatures for the full set.
+
+## Authors
+
+- Gleb Nikolaev — Lomonosov Moscow State University
+- Savelii Shashkov — Lomonosov Moscow State University
+- Dmitriy Korshunov — Geological Institute of the Russian Academy of Sciences
+- Andrey Krylov — Lomonosov Moscow State University
+- Alexander Khvostikov (corresponding author) — Lomonosov Moscow State University
+
+## Citation
+
+A paper describing PRIMO is currently under review; full citation details
+(venue, year, DOI) will be added once it is published. Until then, please
+credit the authors:
+
+```bibtex
+@unpublished{primo,
+  title  = {PRIMO: Panoramic Reconstruction with Integrated Microscopy-Specific Optimization},
+  author = {Nikolaev, Gleb and Shashkov, Savelii and Korshunov, Dmitriy and Krylov, Andrey and Khvostikov, Alexander},
+  year   = {2026},
+  note   = {Manuscript under review}
+}
+```
+
+## License
+
+[Apache-2.0](LICENSE); bundled third-party components — see
+[THIRD_PARTY_LICENSES.md](THIRD_PARTY_LICENSES.md).