poseigen 0.1.0__tar.gz

poseigen-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: poseigen
+Version: 0.1.0
+Summary: Meta package for the Poseigen ML suite
+Author-email: Husam Abdulnabi <husam.abdulnabi@gmail.com>
+Maintainer-email: Husam Abdulnabi <husam.abdulnabi@gmail.com>
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/husam94/poseigen
+Project-URL: Repository, https://github.com/husam94/poseigen
+Project-URL: Issues, https://github.com/husam94/poseigen/issues
+Keywords: poseigen,bioinformatics,machine-learning,deep-learning
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Topic :: Scientific/Engineering
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.12
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+Requires-Dist: poseigen_seaside
+Requires-Dist: poseigen_chisel
+Requires-Dist: poseigen_compass
+Requires-Dist: poseigen_binmeths
+Requires-Dist: poseigen_trident
+Requires-Dist: poseigen_mimic
+Requires-Dist: poseigen_oyster
+
+# Poseigen
+
+Poseigen is a modular ecosystem of Python packages for machine-learning workflows with biological sequence data. This repository is its public landing page and meta-package source; each component's source is maintained separately.
+
+## Component packages
+
+- [poseigen_seaside](https://github.com/Husam94/poseigen_seaside) ([PyPI](https://pypi.org/project/poseigen_seaside/)) — shared utilities, metrics, and visualization.
+- [poseigen_chisel](https://github.com/Husam94/poseigen_chisel) ([PyPI](https://pypi.org/project/poseigen_chisel/)) — biological data processing and conversion into ML-ready inputs.
+- [poseigen_compass](https://github.com/Husam94/poseigen_compass) ([PyPI](https://pypi.org/project/poseigen_compass/)) — hyperparameter search, candidate scoring, and ensemble evaluation.
+- [poseigen_binmeths](https://github.com/Husam94/poseigen_binmeths) ([PyPI](https://pypi.org/project/poseigen_binmeths/)) — binning, balanced sampling, and split-generation methods.
+- [poseigen_trident](https://github.com/Husam94/poseigen_trident) ([PyPI](https://pypi.org/project/poseigen_trident/)) — neural-network building blocks and training utilities.
+- [poseigen_mimic](https://github.com/Husam94/poseigen_mimic) ([PyPI](https://pypi.org/project/poseigen_mimic/)) — unified sequence-embedding architectures built on Trident.
+- [poseigen_oyster](https://github.com/Husam94/poseigen_oyster) ([PyPI](https://pypi.org/project/poseigen_oyster/)) — glass-box genomic sequence models with exact position-specific k-mer contributions.
+
+## How the packages fit together
+
+- Seaside provides shared utilities.
+- Chisel prepares biological data for modeling.
+- Binmeths provides binning and data-splitting methods.
+- Trident provides reusable neural-network and training components.
+- Mimic and Oyster build sequence models using Trident.
+- Compass supports model selection, optimization, and evaluation.
+
+## Installation
+
+Install the full suite from PyPI:
+
+```bash
+python -m pip install poseigen
+```
+
+You can also install individual components, for example:
+
+```bash
+python -m pip install poseigen_binmeths poseigen_oyster poseigen_trident
+```
+
+See each component's repository for its documentation, source, and release history.
+
+## Development and releases
+
+This is a hub, not a monorepo; component source code is not vendored here. See [RELEASE.md](RELEASE.md) for the suite's release process.

poseigen-0.1.0/README.md

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+# Poseigen
+
+Poseigen is a modular ecosystem of Python packages for machine-learning workflows with biological sequence data. This repository is its public landing page and meta-package source; each component's source is maintained separately.
+
+## Component packages
+
+- [poseigen_seaside](https://github.com/Husam94/poseigen_seaside) ([PyPI](https://pypi.org/project/poseigen_seaside/)) — shared utilities, metrics, and visualization.
+- [poseigen_chisel](https://github.com/Husam94/poseigen_chisel) ([PyPI](https://pypi.org/project/poseigen_chisel/)) — biological data processing and conversion into ML-ready inputs.
+- [poseigen_compass](https://github.com/Husam94/poseigen_compass) ([PyPI](https://pypi.org/project/poseigen_compass/)) — hyperparameter search, candidate scoring, and ensemble evaluation.
+- [poseigen_binmeths](https://github.com/Husam94/poseigen_binmeths) ([PyPI](https://pypi.org/project/poseigen_binmeths/)) — binning, balanced sampling, and split-generation methods.
+- [poseigen_trident](https://github.com/Husam94/poseigen_trident) ([PyPI](https://pypi.org/project/poseigen_trident/)) — neural-network building blocks and training utilities.
+- [poseigen_mimic](https://github.com/Husam94/poseigen_mimic) ([PyPI](https://pypi.org/project/poseigen_mimic/)) — unified sequence-embedding architectures built on Trident.
+- [poseigen_oyster](https://github.com/Husam94/poseigen_oyster) ([PyPI](https://pypi.org/project/poseigen_oyster/)) — glass-box genomic sequence models with exact position-specific k-mer contributions.
+
+## How the packages fit together
+
+- Seaside provides shared utilities.
+- Chisel prepares biological data for modeling.
+- Binmeths provides binning and data-splitting methods.
+- Trident provides reusable neural-network and training components.
+- Mimic and Oyster build sequence models using Trident.
+- Compass supports model selection, optimization, and evaluation.
+
+## Installation
+
+Install the full suite from PyPI:
+
+```bash
+python -m pip install poseigen
+```
+
+You can also install individual components, for example:
+
+```bash
+python -m pip install poseigen_binmeths poseigen_oyster poseigen_trident
+```
+
+See each component's repository for its documentation, source, and release history.
+
+## Development and releases
+
+This is a hub, not a monorepo; component source code is not vendored here. See [RELEASE.md](RELEASE.md) for the suite's release process.

poseigen-0.1.0/pyproject.toml

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+[build-system]
+requires = ["setuptools>=68", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "poseigen"
+version = "0.1.0"
+description = "Meta package for the Poseigen ML suite"
+readme = { file = "README.md", content-type = "text/markdown" }
+requires-python = ">=3.12"
+license = "MIT"
+authors = [{ name = "Husam Abdulnabi", email = "husam.abdulnabi@gmail.com" }]
+maintainers = [{ name = "Husam Abdulnabi", email = "husam.abdulnabi@gmail.com" }]
+keywords = ["poseigen", "bioinformatics", "machine-learning", "deep-learning"]
+
+classifiers = [
+  "Development Status :: 3 - Alpha",
+  "Intended Audience :: Developers",
+  "Topic :: Scientific/Engineering",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.12",
+]
+
+dependencies = [
+  "poseigen_seaside",
+  "poseigen_chisel",
+  "poseigen_compass",
+  "poseigen_binmeths",
+  "poseigen_trident",
+  "poseigen_mimic",
+  "poseigen_oyster",
+]
+
+[project.urls]
+Homepage = "https://github.com/husam94/poseigen"
+Repository = "https://github.com/husam94/poseigen"
+Issues = "https://github.com/husam94/poseigen/issues"
+
+[tool.setuptools]
+package-dir = {"" = "src"}
+
+[tool.setuptools.packages.find]
+where = ["src"]

poseigen-0.1.0/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

poseigen-0.1.0/src/poseigen/__init__.py

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+"""Top-level package for the Poseigen suite meta distribution."""
+
+__version__ = "0.1.0"
+
+SUITE_PACKAGES = [
+    "poseigen_seaside",
+    "poseigen_chisel",
+    "poseigen_compass",
+    "poseigen_binmeths",
+    "poseigen_trident",
+    "poseigen_mimic",
+    "poseigen_oyster",
+]

poseigen-0.1.0/src/poseigen.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: poseigen
+Version: 0.1.0
+Summary: Meta package for the Poseigen ML suite
+Author-email: Husam Abdulnabi <husam.abdulnabi@gmail.com>
+Maintainer-email: Husam Abdulnabi <husam.abdulnabi@gmail.com>
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/husam94/poseigen
+Project-URL: Repository, https://github.com/husam94/poseigen
+Project-URL: Issues, https://github.com/husam94/poseigen/issues
+Keywords: poseigen,bioinformatics,machine-learning,deep-learning
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Topic :: Scientific/Engineering
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.12
+Requires-Python: >=3.12
+Description-Content-Type: text/markdown
+Requires-Dist: poseigen_seaside
+Requires-Dist: poseigen_chisel
+Requires-Dist: poseigen_compass
+Requires-Dist: poseigen_binmeths
+Requires-Dist: poseigen_trident
+Requires-Dist: poseigen_mimic
+Requires-Dist: poseigen_oyster
+
+# Poseigen
+
+Poseigen is a modular ecosystem of Python packages for machine-learning workflows with biological sequence data. This repository is its public landing page and meta-package source; each component's source is maintained separately.
+
+## Component packages
+
+- [poseigen_seaside](https://github.com/Husam94/poseigen_seaside) ([PyPI](https://pypi.org/project/poseigen_seaside/)) — shared utilities, metrics, and visualization.
+- [poseigen_chisel](https://github.com/Husam94/poseigen_chisel) ([PyPI](https://pypi.org/project/poseigen_chisel/)) — biological data processing and conversion into ML-ready inputs.
+- [poseigen_compass](https://github.com/Husam94/poseigen_compass) ([PyPI](https://pypi.org/project/poseigen_compass/)) — hyperparameter search, candidate scoring, and ensemble evaluation.
+- [poseigen_binmeths](https://github.com/Husam94/poseigen_binmeths) ([PyPI](https://pypi.org/project/poseigen_binmeths/)) — binning, balanced sampling, and split-generation methods.
+- [poseigen_trident](https://github.com/Husam94/poseigen_trident) ([PyPI](https://pypi.org/project/poseigen_trident/)) — neural-network building blocks and training utilities.
+- [poseigen_mimic](https://github.com/Husam94/poseigen_mimic) ([PyPI](https://pypi.org/project/poseigen_mimic/)) — unified sequence-embedding architectures built on Trident.
+- [poseigen_oyster](https://github.com/Husam94/poseigen_oyster) ([PyPI](https://pypi.org/project/poseigen_oyster/)) — glass-box genomic sequence models with exact position-specific k-mer contributions.
+
+## How the packages fit together
+
+- Seaside provides shared utilities.
+- Chisel prepares biological data for modeling.
+- Binmeths provides binning and data-splitting methods.
+- Trident provides reusable neural-network and training components.
+- Mimic and Oyster build sequence models using Trident.
+- Compass supports model selection, optimization, and evaluation.
+
+## Installation
+
+Install the full suite from PyPI:
+
+```bash
+python -m pip install poseigen
+```
+
+You can also install individual components, for example:
+
+```bash
+python -m pip install poseigen_binmeths poseigen_oyster poseigen_trident
+```
+
+See each component's repository for its documentation, source, and release history.
+
+## Development and releases
+
+This is a hub, not a monorepo; component source code is not vendored here. See [RELEASE.md](RELEASE.md) for the suite's release process.

poseigen-0.1.0/src/poseigen.egg-info/SOURCES.txt

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+README.md
+pyproject.toml
+src/poseigen/__init__.py
+src/poseigen.egg-info/PKG-INFO
+src/poseigen.egg-info/SOURCES.txt
+src/poseigen.egg-info/dependency_links.txt
+src/poseigen.egg-info/requires.txt
+src/poseigen.egg-info/top_level.txt

poseigen-0.1.0/src/poseigen.egg-info/dependency_links.txt

@@ -0,0 +1 @@
+

poseigen-0.1.0/src/poseigen.egg-info/requires.txt

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+poseigen_seaside
+poseigen_chisel
+poseigen_compass
+poseigen_binmeths
+poseigen_trident
+poseigen_mimic
+poseigen_oyster

poseigen-0.1.0/src/poseigen.egg-info/top_level.txt

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+poseigen