polystore 0.2.1__tar.gz → 0.2.2__tar.gz

{polystore-0.2.1/src/polystore.egg-info → polystore-0.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: polystore
-Version: 0.2.1
+Version: 0.2.2
 Summary: Framework-agnostic multi-backend storage abstraction for ML and scientific computing
 Author-email: Tristan Simas <tristan.simas@mail.mcgill.ca>
 License-Expression: MIT
@@ -58,6 +58,7 @@ Requires-Dist: pytest-cov>=4.1.0; extra == "dev"
 Requires-Dist: coverage>=7.3.2; extra == "dev"
 Requires-Dist: genbadge[coverage]; extra == "dev"
 Requires-Dist: pandas>=2.3.1; extra == "dev"
+Requires-Dist: jpype1>=1.4.0; extra == "dev"
 Requires-Dist: black>=23.0.0; extra == "dev"
 Requires-Dist: ruff>=0.1.0; extra == "dev"
 Provides-Extra: docs

{polystore-0.2.1 → polystore-0.2.2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "polystore"
-version = "0.2.1"
+version = "0.2.2"
 description = "Framework-agnostic multi-backend storage abstraction for ML and scientific computing"
 readme = "README.md"
 requires-python = ">=3.11"
@@ -94,6 +94,7 @@ dev = [
     "coverage>=7.3.2",
     "genbadge[coverage]",
     "pandas>=2.3.1",
+    "jpype1>=1.4.0",
     "black>=23.0.0",
     "ruff>=0.1.0",
 ]

{polystore-0.2.1 → polystore-0.2.2}/src/polystore/__init__.py

@@ -40,6 +40,7 @@ from .filemanager import FileManager
 from .formats import DEFAULT_IMAGE_EXTENSIONS, FileFormat
 from .imagej_runtime import (
     FIJI_IMAGEJ_RUNTIME,
+    ImageJJvmTeardown,
     ImageJRuntimePolicy,
     ImageJRuntimeUnavailableError,
 )
@@ -96,6 +97,7 @@ __all__ = [
     "Backend",
     "MemoryType",
     "FileFormat",
+    "ImageJJvmTeardown",
     "ImageJRuntimePolicy",
     "ImageJRuntimeUnavailableError",
     "FIJI_IMAGEJ_RUNTIME",

{polystore-0.2.1 → polystore-0.2.2}/src/polystore/imagej_runtime.py

@@ -5,6 +5,7 @@ from __future__ import annotations
 import logging
 import time
 from dataclasses import dataclass
+from enum import Enum
 from typing import Any
 
 logger = logging.getLogger(__name__)
@@ -14,6 +15,20 @@ class ImageJRuntimeUnavailableError(RuntimeError):
     """Raised when an ImageJ distribution cannot use its declared Java runtime."""
 
 
+class ImageJJvmTeardown(Enum):
+    """JPype teardown behavior owned by an ImageJ process runtime."""
+
+    PROCESS_EXIT = False
+    DESTROY_JVM = True
+
+    def configure(self) -> None:
+        """Apply this teardown behavior before the process starts its JVM."""
+
+        import jpype.config
+
+        jpype.config.destroy_jvm = self.value
+
+
 @dataclass(frozen=True, slots=True)
 class ImageJRuntimePolicy:
     """Own the endpoint and managed Java requirement for an ImageJ runtime."""
@@ -22,6 +37,7 @@ class ImageJRuntimePolicy:
     java_fetch: str
     java_vendor: str
     java_version: str
+    jvm_teardown: ImageJJvmTeardown
     initialization_retry_delays_seconds: tuple[float, ...] = ()
 
     @property
@@ -66,6 +82,7 @@ class ImageJRuntimePolicy:
     def configure_java(self, scyjava_module: Any) -> None:
         """Select managed Java before startup or validate the active JVM."""
 
+        self.jvm_teardown.configure()
         if scyjava_module.jvm_started():
             self.require_compatible_active_java(scyjava_module)
             return
@@ -105,5 +122,6 @@ FIJI_IMAGEJ_RUNTIME = ImageJRuntimePolicy(
     java_fetch="always",
     java_vendor="zulu-jre",
     java_version="21",
+    jvm_teardown=ImageJJvmTeardown.PROCESS_EXIT,
     initialization_retry_delays_seconds=(1.0, 2.0),
 )

{polystore-0.2.1 → polystore-0.2.2/src/polystore.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: polystore
-Version: 0.2.1
+Version: 0.2.2
 Summary: Framework-agnostic multi-backend storage abstraction for ML and scientific computing
 Author-email: Tristan Simas <tristan.simas@mail.mcgill.ca>
 License-Expression: MIT
@@ -58,6 +58,7 @@ Requires-Dist: pytest-cov>=4.1.0; extra == "dev"
 Requires-Dist: coverage>=7.3.2; extra == "dev"
 Requires-Dist: genbadge[coverage]; extra == "dev"
 Requires-Dist: pandas>=2.3.1; extra == "dev"
+Requires-Dist: jpype1>=1.4.0; extra == "dev"
 Requires-Dist: black>=23.0.0; extra == "dev"
 Requires-Dist: ruff>=0.1.0; extra == "dev"
 Provides-Extra: docs

{polystore-0.2.1 → polystore-0.2.2}/src/polystore.egg-info/requires.txt

@@ -25,6 +25,7 @@ pytest-cov>=4.1.0
 coverage>=7.3.2
 genbadge[coverage]
 pandas>=2.3.1
+jpype1>=1.4.0
 black>=23.0.0
 ruff>=0.1.0
 

{polystore-0.2.1 → polystore-0.2.2}/tests/test_imagej_runtime.py

@@ -6,6 +6,7 @@ import pytest
 
 from polystore.imagej_runtime import (
     FIJI_IMAGEJ_RUNTIME,
+    ImageJJvmTeardown,
     ImageJRuntimePolicy,
     ImageJRuntimeUnavailableError,
 )
@@ -49,7 +50,10 @@ class _ImageJ:
         return self.gateway
 
 
-def test_fiji_runtime_selects_managed_java_before_initialization() -> None:
+def test_fiji_runtime_selects_managed_java_before_initialization(monkeypatch) -> None:
+    import jpype.config
+
+    monkeypatch.setattr(jpype.config, "destroy_jvm", True)
     scyjava = _ScyJava(started=False, java_version="21.0.8")
     imagej = _ImageJ(scyjava)
 
@@ -58,6 +62,7 @@ def test_fiji_runtime_selects_managed_java_before_initialization() -> None:
     assert gateway is imagej.gateway
     assert scyjava.constraints == [{"fetch": "always", "vendor": "zulu-jre", "version": "21"}]
     assert imagej.calls == [("sc.fiji:fiji", "headless")]
+    assert jpype.config.destroy_jvm is False
 
 
 def test_runtime_accepts_compatible_active_java_without_reconfiguration() -> None:
@@ -90,6 +95,7 @@ def test_runtime_reports_an_unparseable_active_java_version() -> None:
         java_fetch="always",
         java_vendor="example-jre",
         java_version="21",
+        jvm_teardown=ImageJJvmTeardown.PROCESS_EXIT,
     )
     scyjava = _ScyJava(started=True, java_version="unknown")
 
@@ -132,6 +138,7 @@ def test_runtime_retries_initialization_only_before_jvm_start(monkeypatch) -> No
         java_fetch="always",
         java_vendor="example-jre",
         java_version="21",
+        jvm_teardown=ImageJJvmTeardown.PROCESS_EXIT,
         initialization_retry_delays_seconds=(0.1, 0.2),
     )
     scyjava = _ScyJava(started=False, java_version="21")
@@ -162,6 +169,7 @@ def test_runtime_preserves_final_failure_after_retry_schedule() -> None:
         java_fetch="always",
         java_vendor="example-jre",
         java_version="21",
+        jvm_teardown=ImageJJvmTeardown.PROCESS_EXIT,
         initialization_retry_delays_seconds=(0.0, 0.0),
     )
     scyjava = _ScyJava(started=False, java_version="21")