polars-bio 0.11.0__tar.gz → 0.13.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (165) hide show
  1. {polars_bio-0.11.0 → polars_bio-0.13.0}/Cargo.lock +266 -183
  2. {polars_bio-0.11.0 → polars_bio-0.13.0}/Cargo.toml +15 -15
  3. {polars_bio-0.11.0 → polars_bio-0.13.0}/PKG-INFO +2 -2
  4. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/faq.md +2 -2
  5. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/features.md +40 -21
  6. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/tutorial.ipynb +93 -103
  7. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/quickstart.md +1 -1
  8. polars_bio-0.13.0/polars_bio/__init__.py +120 -0
  9. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/interval_op_helpers.py +1 -5
  10. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/io.py +291 -286
  11. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/range_op.py +3 -17
  12. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/range_op_helpers.py +0 -13
  13. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/sql.py +4 -8
  14. polars_bio-0.13.0/polars_bio/utils.py +46 -0
  15. {polars_bio-0.11.0 → polars_bio-0.13.0}/pyproject.toml +3 -3
  16. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/lib.rs +22 -6
  17. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/operation.rs +0 -4
  18. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/option.rs +1 -10
  19. polars_bio-0.13.0/src/streaming.rs +59 -0
  20. polars_bio-0.13.0/tests/data/io/fasta/test.fasta +4 -0
  21. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_ensembl_parsing.py +2 -2
  22. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_ensembl_vcf_parsing.py +2 -2
  23. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_io.py +23 -25
  24. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_overlap_algorithms.py +38 -0
  25. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_parallel_io.py +2 -2
  26. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_polars_ext.py +11 -11
  27. polars_bio-0.13.0/tests/test_streaming.py +695 -0
  28. polars_bio-0.11.0/polars_bio/__init__.py +0 -77
  29. polars_bio-0.11.0/src/streaming.rs +0 -45
  30. polars_bio-0.11.0/tests/test_streaming.py +0 -132
  31. {polars_bio-0.11.0 → polars_bio-0.13.0}/.github/workflows/publish_documentation.yml +0 -0
  32. {polars_bio-0.11.0 → polars_bio-0.13.0}/.github/workflows/publish_to_pypi.yml +0 -0
  33. {polars_bio-0.11.0 → polars_bio-0.13.0}/.github/workflows/release.yml +0 -0
  34. {polars_bio-0.11.0 → polars_bio-0.13.0}/.gitignore +0 -0
  35. {polars_bio-0.11.0 → polars_bio-0.13.0}/.pre-commit-config.yaml +0 -0
  36. {polars_bio-0.11.0 → polars_bio-0.13.0}/.readthedocs.yaml +0 -0
  37. {polars_bio-0.11.0 → polars_bio-0.13.0}/LICENSE +0 -0
  38. {polars_bio-0.11.0 → polars_bio-0.13.0}/Makefile +0 -0
  39. {polars_bio-0.11.0 → polars_bio-0.13.0}/README.md +0 -0
  40. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/api.md +0 -0
  41. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/count-overlaps-parallel.png +0 -0
  42. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/count-overlaps-single.png +0 -0
  43. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/coverage-parallel.png +0 -0
  44. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/coverage-single.png +0 -0
  45. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/logo-large.png +0 -0
  46. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/logo.png +0 -0
  47. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/bioframe.png +0 -0
  48. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/bioframe_sink.png +0 -0
  49. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/dataframes/polars-bio-overlap-mem.png +0 -0
  50. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/dataframes/polars-bio-overlap-pd-mem.png +0 -0
  51. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/dataframes/polars-bio-overlap-pl-mem.png +0 -0
  52. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/polars-bio.png +0 -0
  53. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/polars-bio_sink.png +0 -0
  54. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/polars-bio_stream_sink.png +0 -0
  55. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/pyranges0.png +0 -0
  56. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/pyranges0_sink.png +0 -0
  57. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/pyranges1.png +0 -0
  58. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/memory/pyranges1_sink.png +0 -0
  59. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/nearest-parallel.png +0 -0
  60. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/nearest-single.png +0 -0
  61. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/overlap-parallel.png +0 -0
  62. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/overlap-single.png +0 -0
  63. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/results-nearest-0.1.1.png +0 -0
  64. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/assets/results-overlap-0.1.1.png +0 -0
  65. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/contact.md +0 -0
  66. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/index.md +0 -0
  67. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/example.bam +0 -0
  68. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/example.bed.bgz +0 -0
  69. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/example.fastq.gz +0 -0
  70. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/example.gff3.bgz +0 -0
  71. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/example.vcf +0 -0
  72. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/exons/.part-00000-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet.crc +0 -0
  73. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/exons/.part-00001-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet.crc +0 -0
  74. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/exons/_SUCCESS +0 -0
  75. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/exons/part-00000-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet +0 -0
  76. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/exons/part-00001-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet +0 -0
  77. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/fBrain-DS14718/.part-00000-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet.crc +0 -0
  78. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/fBrain-DS14718/.part-00001-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet.crc +0 -0
  79. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/fBrain-DS14718/_SUCCESS +0 -0
  80. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/fBrain-DS14718/part-00000-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet +0 -0
  81. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/notebooks/data/fBrain-DS14718/part-00001-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet +0 -0
  82. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/performance.md +0 -0
  83. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/requirements.txt +0 -0
  84. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/supplement.md +0 -0
  85. {polars_bio-0.11.0 → polars_bio-0.13.0}/docs/versions.json +0 -0
  86. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/README.md +0 -0
  87. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/bin/.env +0 -0
  88. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/bin/start.sh +0 -0
  89. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/bin/stop.sh +0 -0
  90. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/data/policy-anonymous.json +0 -0
  91. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/data/policy-priv.json +0 -0
  92. {polars_bio-0.11.0/tests/data/io/fasta → polars_bio-0.13.0/it/data}/test.fasta +0 -0
  93. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/data/vep.vcf +0 -0
  94. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/data/vep.vcf.bgz +0 -0
  95. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/docker-compose.yml +0 -0
  96. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/it_ensembl_vcf_bgz.py +0 -0
  97. {polars_bio-0.11.0 → polars_bio-0.13.0}/it/it_object_storage_io.py +0 -0
  98. {polars_bio-0.11.0 → polars_bio-0.13.0}/mkdocs.yml +0 -0
  99. {polars_bio-0.11.0 → polars_bio-0.13.0}/poetry.lock +0 -0
  100. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars-bio.iml +0 -0
  101. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/constants.py +0 -0
  102. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/context.py +0 -0
  103. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/logging.py +0 -0
  104. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/operations.py +0 -0
  105. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/polars_ext.py +0 -0
  106. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/range_op_io.py +0 -0
  107. {polars_bio-0.11.0 → polars_bio-0.13.0}/polars_bio/range_utils.py +0 -0
  108. {polars_bio-0.11.0 → polars_bio-0.13.0}/requirements.txt +0 -0
  109. {polars_bio-0.11.0 → polars_bio-0.13.0}/rust-toolchain.toml +0 -0
  110. {polars_bio-0.11.0 → polars_bio-0.13.0}/rustfmt.toml +0 -0
  111. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/context.rs +0 -0
  112. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/query.rs +0 -0
  113. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/scan.rs +0 -0
  114. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/udtf.rs +0 -0
  115. {polars_bio-0.11.0 → polars_bio-0.13.0}/src/utils.rs +0 -0
  116. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/_expected.py +0 -0
  117. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/count_overlaps/reads.csv +0 -0
  118. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/count_overlaps/targets.csv +0 -0
  119. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/coverage/reads.csv +0 -0
  120. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/coverage/targets.csv +0 -0
  121. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/exons/.part-00000-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet.crc +0 -0
  122. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/exons/.part-00001-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet.crc +0 -0
  123. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/exons/_SUCCESS +0 -0
  124. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/exons/part-00000-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet +0 -0
  125. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/exons/part-00001-47fafbb5-1cab-410c-9461-d10effacf760-c000.snappy.parquet +0 -0
  126. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/fBrain-DS14718/.part-00000-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet.crc +0 -0
  127. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/fBrain-DS14718/.part-00001-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet.crc +0 -0
  128. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/fBrain-DS14718/_SUCCESS +0 -0
  129. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/fBrain-DS14718/part-00000-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet +0 -0
  130. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/fBrain-DS14718/part-00001-a0d75244-2d87-41eb-a3eb-a18847c7cb87-c000.snappy.parquet +0 -0
  131. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/bam/test.bam +0 -0
  132. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/bam/test.bam.bai +0 -0
  133. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/bed/ENCFF001XKR.bed.gz +0 -0
  134. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/bed/chr16_fragile_site.bed +0 -0
  135. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/bed/chr16_fragile_site.bed.bgz +0 -0
  136. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/bed/test.bed +0 -0
  137. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/example.fastq +0 -0
  138. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/example.fastq.bgz +0 -0
  139. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/example.fastq.bgz.gzi +0 -0
  140. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/example.fastq.gz +0 -0
  141. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/sample_parallel.fastq.bgz +0 -0
  142. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/sample_parallel.fastq.bgz.gzi +0 -0
  143. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/test.fastq +0 -0
  144. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/fastq/wrong_extension.fastq.gz +0 -0
  145. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/gff/gencode.v38.annotation.gff3 +0 -0
  146. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/gff/gencode.v38.annotation.gff3.bgz +0 -0
  147. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/gff/gencode.v38.annotation.gff3.gz +0 -0
  148. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/gff/wrong_extension.gff3.gz +0 -0
  149. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/ensembl-2.vcf +0 -0
  150. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/ensembl.vcf +0 -0
  151. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/vep.vcf +0 -0
  152. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/vep.vcf.bgz +0 -0
  153. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/vep.vcf.gz +0 -0
  154. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/wrong_extension.vcf.bgz +0 -0
  155. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/io/vcf/wrong_extension.vcf.gz +0 -0
  156. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/merge/input.csv +0 -0
  157. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/nearest/reads.csv +0 -0
  158. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/nearest/targets.csv +0 -0
  159. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/overlap/reads.csv +0 -0
  160. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/data/overlap/targets.csv +0 -0
  161. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_bioframe.py +0 -0
  162. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_native.py +0 -0
  163. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_pandas.py +0 -0
  164. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_polars.py +0 -0
  165. {polars_bio-0.11.0 → polars_bio-0.13.0}/tests/test_warnings.py +0 -0
{polars_bio-0.11.0 → polars_bio-0.13.0}/Cargo.lock RENAMED
@@ -105,6 +105,16 @@ dependencies = [
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  "memchr",
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  ]
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+ [[package]]
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+ name = "aligned-vec"
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+ version = "0.6.4"
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+ source = "registry+https://github.com/rust-lang/crates.io-index"
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+ checksum = "dc890384c8602f339876ded803c97ad529f3842aba97f6392b3dba0dd171769b"
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+ dependencies = [
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+ "equator",
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+ "serde",
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+ ]
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+
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  [[package]]
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  name = "alloc-no-stdlib"
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  version = "2.0.4"
@@ -524,6 +534,18 @@ dependencies = [
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  "syn 1.0.109",
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  ]
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+ [[package]]
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+ name = "async-channel"
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+ version = "2.5.0"
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+ source = "registry+https://github.com/rust-lang/crates.io-index"
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+ checksum = "924ed96dd52d1b75e9c1a3e6275715fd320f5f9439fb5a4a11fa51f4221158d2"
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+ dependencies = [
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+ "concurrent-queue",
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+ "event-listener-strategy",
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+ "futures-core",
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+ "pin-project-lite",
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+ ]
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+
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  [[package]]
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  name = "async-compression"
529
551
  version = "0.4.19"
@@ -705,7 +727,7 @@ dependencies = [
705
727
  "editdistancek",
706
728
  "enum-map",
707
729
  "fxhash",
708
- "itertools 0.14.0",
730
+ "itertools",
709
731
  "itertools-num",
710
732
  "lazy_static",
711
733
  "multimap",
@@ -1064,6 +1086,15 @@ dependencies = [
1064
1086
  "static_assertions",
1065
1087
  ]
1066
1088
 
1089
+ [[package]]
1090
+ name = "concurrent-queue"
1091
+ version = "2.5.0"
1092
+ source = "registry+https://github.com/rust-lang/crates.io-index"
1093
+ checksum = "4ca0197aee26d1ae37445ee532fefce43251d24cc7c166799f4d46817f1d3973"
1094
+ dependencies = [
1095
+ "crossbeam-utils",
1096
+ ]
1097
+
1067
1098
  [[package]]
1068
1099
  name = "const-oid"
1069
1100
  version = "0.9.6"
@@ -1354,9 +1385,9 @@ dependencies = [
1354
1385
  "datafusion-sql",
1355
1386
  "flate2",
1356
1387
  "futures",
1357
- "itertools 0.14.0",
1388
+ "itertools",
1358
1389
  "log",
1359
- "object_store 0.12.3",
1390
+ "object_store",
1360
1391
  "parking_lot",
1361
1392
  "parquet",
1362
1393
  "rand 0.9.2",
@@ -1373,7 +1404,7 @@ dependencies = [
1373
1404
  [[package]]
1374
1405
  name = "datafusion-bio-format-bam"
1375
1406
  version = "0.1.0"
1376
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1407
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1377
1408
  dependencies = [
1378
1409
  "async-stream",
1379
1410
  "async-trait",
@@ -1394,7 +1425,7 @@ dependencies = [
1394
1425
  [[package]]
1395
1426
  name = "datafusion-bio-format-bed"
1396
1427
  version = "0.1.0"
1397
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1428
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1398
1429
  dependencies = [
1399
1430
  "async-compression",
1400
1431
  "async-stream",
@@ -1407,7 +1438,7 @@ dependencies = [
1407
1438
  "futures",
1408
1439
  "futures-util",
1409
1440
  "log",
1410
- "noodles",
1441
+ "noodles 0.93.0",
1411
1442
  "noodles-bed",
1412
1443
  "noodles-bgzf 0.36.0",
1413
1444
  "opendal",
@@ -1418,14 +1449,15 @@ dependencies = [
1418
1449
  [[package]]
1419
1450
  name = "datafusion-bio-format-core"
1420
1451
  version = "0.1.0"
1421
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1452
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1422
1453
  dependencies = [
1423
1454
  "async-compression",
1424
1455
  "bytes",
1425
1456
  "datafusion",
1426
1457
  "datafusion-execution",
1458
+ "futures",
1427
1459
  "log",
1428
- "noodles",
1460
+ "noodles 0.93.0",
1429
1461
  "noodles-bgzf 0.36.0",
1430
1462
  "opendal",
1431
1463
  "tokio",
@@ -1436,7 +1468,7 @@ dependencies = [
1436
1468
  [[package]]
1437
1469
  name = "datafusion-bio-format-fasta"
1438
1470
  version = "0.1.0"
1439
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1471
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1440
1472
  dependencies = [
1441
1473
  "async-compression",
1442
1474
  "async-stream",
@@ -1447,7 +1479,7 @@ dependencies = [
1447
1479
  "futures",
1448
1480
  "futures-util",
1449
1481
  "log",
1450
- "noodles",
1482
+ "noodles 0.93.0",
1451
1483
  "noodles-bgzf 0.36.0",
1452
1484
  "noodles-fasta 0.55.0",
1453
1485
  "opendal",
@@ -1458,7 +1490,7 @@ dependencies = [
1458
1490
  [[package]]
1459
1491
  name = "datafusion-bio-format-fastq"
1460
1492
  version = "0.1.0"
1461
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1493
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1462
1494
  dependencies = [
1463
1495
  "async-compression",
1464
1496
  "async-stream",
@@ -1469,7 +1501,7 @@ dependencies = [
1469
1501
  "futures",
1470
1502
  "futures-util",
1471
1503
  "log",
1472
- "noodles",
1504
+ "noodles 0.93.0",
1473
1505
  "noodles-bgzf 0.36.0",
1474
1506
  "noodles-fastq 0.19.0",
1475
1507
  "opendal",
@@ -1482,7 +1514,7 @@ dependencies = [
1482
1514
  [[package]]
1483
1515
  name = "datafusion-bio-format-gff"
1484
1516
  version = "0.1.0"
1485
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1517
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1486
1518
  dependencies = [
1487
1519
  "async-compression",
1488
1520
  "async-stream",
@@ -1494,7 +1526,7 @@ dependencies = [
1494
1526
  "futures",
1495
1527
  "futures-util",
1496
1528
  "log",
1497
- "noodles",
1529
+ "noodles 0.93.0",
1498
1530
  "noodles-gff 0.50.0",
1499
1531
  "opendal",
1500
1532
  "tokio",
@@ -1504,7 +1536,7 @@ dependencies = [
1504
1536
  [[package]]
1505
1537
  name = "datafusion-bio-format-vcf"
1506
1538
  version = "0.1.0"
1507
- source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=89648086098023a3544f2735fb3395c83118c7e3#89648086098023a3544f2735fb3395c83118c7e3"
1539
+ source = "git+https://github.com/biodatageeks/datafusion-bio-formats.git?rev=0b9746c77aeb0e3a29f6460cb29f48aa17625c1d#0b9746c77aeb0e3a29f6460cb29f48aa17625c1d"
1508
1540
  dependencies = [
1509
1541
  "async-compression",
1510
1542
  "async-stream",
@@ -1516,6 +1548,7 @@ dependencies = [
1516
1548
  "env_logger",
1517
1549
  "futures",
1518
1550
  "log",
1551
+ "noodles 0.100.0",
1519
1552
  "noodles-bgzf 0.36.0",
1520
1553
  "noodles-vcf 0.80.0",
1521
1554
  "opendal",
@@ -1542,9 +1575,9 @@ dependencies = [
1542
1575
  "datafusion-session",
1543
1576
  "datafusion-sql",
1544
1577
  "futures",
1545
- "itertools 0.14.0",
1578
+ "itertools",
1546
1579
  "log",
1547
- "object_store 0.12.3",
1580
+ "object_store",
1548
1581
  "parking_lot",
1549
1582
  "tokio",
1550
1583
  ]
@@ -1568,7 +1601,7 @@ dependencies = [
1568
1601
  "datafusion-session",
1569
1602
  "futures",
1570
1603
  "log",
1571
- "object_store 0.12.3",
1604
+ "object_store",
1572
1605
  "tokio",
1573
1606
  ]
1574
1607
 
@@ -1588,7 +1621,7 @@ dependencies = [
1588
1621
  "indexmap",
1589
1622
  "libc",
1590
1623
  "log",
1591
- "object_store 0.12.3",
1624
+ "object_store",
1592
1625
  "parquet",
1593
1626
  "paste",
1594
1627
  "recursive",
@@ -1631,9 +1664,9 @@ dependencies = [
1631
1664
  "flate2",
1632
1665
  "futures",
1633
1666
  "glob",
1634
- "itertools 0.14.0",
1667
+ "itertools",
1635
1668
  "log",
1636
- "object_store 0.12.3",
1669
+ "object_store",
1637
1670
  "parquet",
1638
1671
  "rand 0.9.2",
1639
1672
  "tempfile",
@@ -1665,7 +1698,7 @@ dependencies = [
1665
1698
  "datafusion-session",
1666
1699
  "futures",
1667
1700
  "num-traits",
1668
- "object_store 0.12.3",
1701
+ "object_store",
1669
1702
  "tokio",
1670
1703
  ]
1671
1704
 
@@ -1689,7 +1722,7 @@ dependencies = [
1689
1722
  "datafusion-physical-plan",
1690
1723
  "datafusion-session",
1691
1724
  "futures",
1692
- "object_store 0.12.3",
1725
+ "object_store",
1693
1726
  "regex",
1694
1727
  "tokio",
1695
1728
  ]
@@ -1714,7 +1747,7 @@ dependencies = [
1714
1747
  "datafusion-physical-plan",
1715
1748
  "datafusion-session",
1716
1749
  "futures",
1717
- "object_store 0.12.3",
1750
+ "object_store",
1718
1751
  "serde_json",
1719
1752
  "tokio",
1720
1753
  ]
@@ -1741,9 +1774,9 @@ dependencies = [
1741
1774
  "datafusion-physical-plan",
1742
1775
  "datafusion-session",
1743
1776
  "futures",
1744
- "itertools 0.14.0",
1777
+ "itertools",
1745
1778
  "log",
1746
- "object_store 0.12.3",
1779
+ "object_store",
1747
1780
  "parking_lot",
1748
1781
  "parquet",
1749
1782
  "rand 0.9.2",
@@ -1768,7 +1801,7 @@ dependencies = [
1768
1801
  "datafusion-expr",
1769
1802
  "futures",
1770
1803
  "log",
1771
- "object_store 0.12.3",
1804
+ "object_store",
1772
1805
  "parking_lot",
1773
1806
  "rand 0.9.2",
1774
1807
  "tempfile",
@@ -1805,7 +1838,7 @@ dependencies = [
1805
1838
  "arrow",
1806
1839
  "datafusion-common",
1807
1840
  "indexmap",
1808
- "itertools 0.14.0",
1841
+ "itertools",
1809
1842
  "paste",
1810
1843
  ]
1811
1844
 
@@ -1850,7 +1883,7 @@ dependencies = [
1850
1883
  "datafusion-expr-common",
1851
1884
  "datafusion-macros",
1852
1885
  "hex",
1853
- "itertools 0.14.0",
1886
+ "itertools",
1854
1887
  "log",
1855
1888
  "md-5",
1856
1889
  "rand 0.9.2",
@@ -1910,7 +1943,7 @@ dependencies = [
1910
1943
  "datafusion-functions-aggregate",
1911
1944
  "datafusion-macros",
1912
1945
  "datafusion-physical-expr-common",
1913
- "itertools 0.14.0",
1946
+ "itertools",
1914
1947
  "log",
1915
1948
  "paste",
1916
1949
  ]
@@ -1982,7 +2015,7 @@ dependencies = [
1982
2015
  "datafusion-expr",
1983
2016
  "datafusion-physical-expr",
1984
2017
  "indexmap",
1985
- "itertools 0.14.0",
2018
+ "itertools",
1986
2019
  "log",
1987
2020
  "recursive",
1988
2021
  "regex",
@@ -2005,7 +2038,7 @@ dependencies = [
2005
2038
  "half",
2006
2039
  "hashbrown 0.14.5",
2007
2040
  "indexmap",
2008
- "itertools 0.14.0",
2041
+ "itertools",
2009
2042
  "log",
2010
2043
  "paste",
2011
2044
  "petgraph",
@@ -2022,7 +2055,7 @@ dependencies = [
2022
2055
  "datafusion-common",
2023
2056
  "datafusion-expr-common",
2024
2057
  "hashbrown 0.14.5",
2025
- "itertools 0.14.0",
2058
+ "itertools",
2026
2059
  ]
2027
2060
 
2028
2061
  [[package]]
@@ -2039,7 +2072,7 @@ dependencies = [
2039
2072
  "datafusion-physical-expr",
2040
2073
  "datafusion-physical-expr-common",
2041
2074
  "datafusion-physical-plan",
2042
- "itertools 0.14.0",
2075
+ "itertools",
2043
2076
  "log",
2044
2077
  "recursive",
2045
2078
  ]
@@ -2067,7 +2100,7 @@ dependencies = [
2067
2100
  "half",
2068
2101
  "hashbrown 0.14.5",
2069
2102
  "indexmap",
2070
- "itertools 0.14.0",
2103
+ "itertools",
2071
2104
  "log",
2072
2105
  "parking_lot",
2073
2106
  "pin-project-lite",
@@ -2086,7 +2119,7 @@ dependencies = [
2086
2119
  "datafusion-common",
2087
2120
  "datafusion-expr",
2088
2121
  "datafusion-proto-common",
2089
- "object_store 0.12.3",
2122
+ "object_store",
2090
2123
  "prost",
2091
2124
  ]
2092
2125
 
@@ -2115,7 +2148,7 @@ dependencies = [
2115
2148
  "futures",
2116
2149
  "log",
2117
2150
  "mimalloc",
2118
- "object_store 0.12.3",
2151
+ "object_store",
2119
2152
  "prost",
2120
2153
  "prost-types",
2121
2154
  "pyo3",
@@ -2144,9 +2177,9 @@ dependencies = [
2144
2177
  "datafusion-physical-plan",
2145
2178
  "datafusion-sql",
2146
2179
  "futures",
2147
- "itertools 0.14.0",
2180
+ "itertools",
2148
2181
  "log",
2149
- "object_store 0.12.3",
2182
+ "object_store",
2150
2183
  "parking_lot",
2151
2184
  "tokio",
2152
2185
  ]
@@ -2332,6 +2365,26 @@ dependencies = [
2332
2365
  "log",
2333
2366
  ]
2334
2367
 
2368
+ [[package]]
2369
+ name = "equator"
2370
+ version = "0.4.2"
2371
+ source = "registry+https://github.com/rust-lang/crates.io-index"
2372
+ checksum = "4711b213838dfee0117e3be6ac926007d7f433d7bbe33595975d4190cb07e6fc"
2373
+ dependencies = [
2374
+ "equator-macro",
2375
+ ]
2376
+
2377
+ [[package]]
2378
+ name = "equator-macro"
2379
+ version = "0.4.2"
2380
+ source = "registry+https://github.com/rust-lang/crates.io-index"
2381
+ checksum = "44f23cf4b44bfce11a86ace86f8a73ffdec849c9fd00a386a53d278bd9e81fb3"
2382
+ dependencies = [
2383
+ "proc-macro2",
2384
+ "quote",
2385
+ "syn 2.0.106",
2386
+ ]
2387
+
2335
2388
  [[package]]
2336
2389
  name = "equivalent"
2337
2390
  version = "1.0.2"
@@ -2360,6 +2413,27 @@ version = "1.5.2"
2360
2413
  source = "registry+https://github.com/rust-lang/crates.io-index"
2361
2414
  checksum = "ca81e6b4777c89fd810c25a4be2b1bd93ea034fbe58e6a75216a34c6b82c539b"
2362
2415
 
2416
+ [[package]]
2417
+ name = "event-listener"
2418
+ version = "5.4.1"
2419
+ source = "registry+https://github.com/rust-lang/crates.io-index"
2420
+ checksum = "e13b66accf52311f30a0db42147dadea9850cb48cd070028831ae5f5d4b856ab"
2421
+ dependencies = [
2422
+ "concurrent-queue",
2423
+ "parking",
2424
+ "pin-project-lite",
2425
+ ]
2426
+
2427
+ [[package]]
2428
+ name = "event-listener-strategy"
2429
+ version = "0.5.4"
2430
+ source = "registry+https://github.com/rust-lang/crates.io-index"
2431
+ checksum = "8be9f3dfaaffdae2972880079a491a1a8bb7cbed0b8dd7a347f668b4150a3b93"
2432
+ dependencies = [
2433
+ "event-listener",
2434
+ "pin-project-lite",
2435
+ ]
2436
+
2363
2437
  [[package]]
2364
2438
  name = "fallible-streaming-iterator"
2365
2439
  version = "0.1.9"
@@ -2443,12 +2517,12 @@ dependencies = [
2443
2517
 
2444
2518
  [[package]]
2445
2519
  name = "fs4"
2446
- version = "0.12.0"
2520
+ version = "0.13.1"
2447
2521
  source = "registry+https://github.com/rust-lang/crates.io-index"
2448
- checksum = "c29c30684418547d476f0b48e84f4821639119c483b1eccd566c8cd0cd05f521"
2522
+ checksum = "8640e34b88f7652208ce9e88b1a37a2ae95227d84abec377ccd3c5cfeb141ed4"
2449
2523
  dependencies = [
2450
- "rustix 0.38.44",
2451
- "windows-sys 0.52.0",
2524
+ "rustix 1.0.8",
2525
+ "windows-sys 0.59.0",
2452
2526
  ]
2453
2527
 
2454
2528
  [[package]]
@@ -2772,19 +2846,21 @@ checksum = "9b112acc8b3adf4b107a8ec20977da0273a8c386765a3ec0229bd500a1443f9f"
2772
2846
 
2773
2847
  [[package]]
2774
2848
  name = "hyper"
2775
- version = "1.6.0"
2849
+ version = "1.7.0"
2776
2850
  source = "registry+https://github.com/rust-lang/crates.io-index"
2777
- checksum = "cc2b571658e38e0c01b1fdca3bbbe93c00d3d71693ff2770043f8c29bc7d6f80"
2851
+ checksum = "eb3aa54a13a0dfe7fbe3a59e0c76093041720fdc77b110cc0fc260fafb4dc51e"
2778
2852
  dependencies = [
2853
+ "atomic-waker",
2779
2854
  "bytes",
2780
2855
  "futures-channel",
2781
- "futures-util",
2856
+ "futures-core",
2782
2857
  "h2",
2783
2858
  "http",
2784
2859
  "http-body",
2785
2860
  "httparse",
2786
2861
  "itoa",
2787
2862
  "pin-project-lite",
2863
+ "pin-utils",
2788
2864
  "smallvec",
2789
2865
  "tokio",
2790
2866
  "want",
@@ -3038,15 +3114,6 @@ version = "1.70.1"
3038
3114
  source = "registry+https://github.com/rust-lang/crates.io-index"
3039
3115
  checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf"
3040
3116
 
3041
- [[package]]
3042
- name = "itertools"
3043
- version = "0.13.0"
3044
- source = "registry+https://github.com/rust-lang/crates.io-index"
3045
- checksum = "413ee7dfc52ee1a4949ceeb7dbc8a33f2d6c088194d9f922fb8318faf1f01186"
3046
- dependencies = [
3047
- "either",
3048
- ]
3049
-
3050
3117
  [[package]]
3051
3118
  name = "itertools"
3052
3119
  version = "0.14.0"
@@ -3557,6 +3624,15 @@ dependencies = [
3557
3624
  "noodles-vcf 0.74.0",
3558
3625
  ]
3559
3626
 
3627
+ [[package]]
3628
+ name = "noodles"
3629
+ version = "0.100.0"
3630
+ source = "git+https://github.com/biodatageeks/noodles.git?rev=289ef32e7d43d142914fb3f02335044ae293871c#289ef32e7d43d142914fb3f02335044ae293871c"
3631
+ dependencies = [
3632
+ "noodles-bgzf 0.42.0",
3633
+ "noodles-vcf 0.80.0",
3634
+ ]
3635
+
3560
3636
  [[package]]
3561
3637
  name = "noodles-bam"
3562
3638
  version = "0.76.0"
@@ -4184,38 +4260,6 @@ dependencies = [
4184
4260
  "memchr",
4185
4261
  ]
4186
4262
 
4187
- [[package]]
4188
- name = "object_store"
4189
- version = "0.11.2"
4190
- source = "registry+https://github.com/rust-lang/crates.io-index"
4191
- checksum = "3cfccb68961a56facde1163f9319e0d15743352344e7808a11795fb99698dcaf"
4192
- dependencies = [
4193
- "async-trait",
4194
- "base64",
4195
- "bytes",
4196
- "chrono",
4197
- "futures",
4198
- "httparse",
4199
- "humantime",
4200
- "hyper",
4201
- "itertools 0.13.0",
4202
- "md-5",
4203
- "parking_lot",
4204
- "percent-encoding",
4205
- "quick-xml 0.37.5",
4206
- "rand 0.8.5",
4207
- "reqwest",
4208
- "ring",
4209
- "rustls-pemfile",
4210
- "serde",
4211
- "serde_json",
4212
- "snafu",
4213
- "tokio",
4214
- "tracing",
4215
- "url",
4216
- "walkdir",
4217
- ]
4218
-
4219
4263
  [[package]]
4220
4264
  name = "object_store"
4221
4265
  version = "0.12.3"
@@ -4233,7 +4277,7 @@ dependencies = [
4233
4277
  "httparse",
4234
4278
  "humantime",
4235
4279
  "hyper",
4236
- "itertools 0.14.0",
4280
+ "itertools",
4237
4281
  "md-5",
4238
4282
  "parking_lot",
4239
4283
  "percent-encoding",
@@ -4336,6 +4380,12 @@ version = "0.1.1"
4336
4380
  source = "registry+https://github.com/rust-lang/crates.io-index"
4337
4381
  checksum = "b15813163c1d831bf4a13c3610c05c0d03b39feb07f7e09fa234dac9b15aaf39"
4338
4382
 
4383
+ [[package]]
4384
+ name = "parking"
4385
+ version = "2.2.1"
4386
+ source = "registry+https://github.com/rust-lang/crates.io-index"
4387
+ checksum = "f38d5652c16fde515bb1ecef450ab0f6a219d619a7274976324d5e377f7dceba"
4388
+
4339
4389
  [[package]]
4340
4390
  name = "parking_lot"
4341
4391
  version = "0.12.4"
@@ -4384,7 +4434,7 @@ dependencies = [
4384
4434
  "lz4_flex",
4385
4435
  "num",
4386
4436
  "num-bigint",
4387
- "object_store 0.12.3",
4437
+ "object_store",
4388
4438
  "paste",
4389
4439
  "seq-macro",
4390
4440
  "simdutf8",
@@ -4551,8 +4601,8 @@ dependencies = [
4551
4601
 
4552
4602
  [[package]]
4553
4603
  name = "polars"
4554
- version = "0.45.1"
4555
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4604
+ version = "0.46.0"
4605
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4556
4606
  dependencies = [
4557
4607
  "getrandom 0.2.16",
4558
4608
  "polars-arrow",
@@ -4571,10 +4621,9 @@ dependencies = [
4571
4621
 
4572
4622
  [[package]]
4573
4623
  name = "polars-arrow"
4574
- version = "0.45.1"
4575
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4624
+ version = "0.46.0"
4625
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4576
4626
  dependencies = [
4577
- "ahash",
4578
4627
  "atoi_simd",
4579
4628
  "avro-schema",
4580
4629
  "bytemuck",
@@ -4614,30 +4663,34 @@ dependencies = [
4614
4663
 
4615
4664
  [[package]]
4616
4665
  name = "polars-compute"
4617
- version = "0.45.1"
4618
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4666
+ version = "0.46.0"
4667
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4619
4668
  dependencies = [
4620
4669
  "atoi_simd",
4621
4670
  "bytemuck",
4622
4671
  "chrono",
4623
4672
  "either",
4624
4673
  "fast-float2",
4674
+ "hashbrown 0.15.5",
4625
4675
  "itoa",
4626
4676
  "num-traits",
4627
4677
  "polars-arrow",
4628
4678
  "polars-error",
4629
4679
  "polars-utils",
4680
+ "rand 0.8.5",
4630
4681
  "ryu",
4682
+ "serde",
4683
+ "skiplist",
4631
4684
  "strength_reduce",
4685
+ "strum_macros",
4632
4686
  "version_check",
4633
4687
  ]
4634
4688
 
4635
4689
  [[package]]
4636
4690
  name = "polars-core"
4637
- version = "0.45.1"
4638
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4691
+ version = "0.46.0"
4692
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4639
4693
  dependencies = [
4640
- "ahash",
4641
4694
  "bitflags",
4642
4695
  "bytemuck",
4643
4696
  "chrono",
@@ -4650,7 +4703,6 @@ dependencies = [
4650
4703
  "itoa",
4651
4704
  "ndarray",
4652
4705
  "num-traits",
4653
- "once_cell",
4654
4706
  "polars-arrow",
4655
4707
  "polars-compute",
4656
4708
  "polars-error",
@@ -4664,34 +4716,32 @@ dependencies = [
4664
4716
  "serde",
4665
4717
  "serde_json",
4666
4718
  "strum_macros",
4667
- "thiserror 2.0.15",
4668
4719
  "version_check",
4669
4720
  "xxhash-rust",
4670
4721
  ]
4671
4722
 
4672
4723
  [[package]]
4673
4724
  name = "polars-error"
4674
- version = "0.45.1"
4675
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4725
+ version = "0.46.0"
4726
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4676
4727
  dependencies = [
4677
4728
  "avro-schema",
4678
- "object_store 0.11.2",
4729
+ "object_store",
4730
+ "parking_lot",
4679
4731
  "polars-arrow-format",
4680
4732
  "regex",
4733
+ "signal-hook",
4681
4734
  "simdutf8",
4682
- "thiserror 2.0.15",
4683
4735
  ]
4684
4736
 
4685
4737
  [[package]]
4686
4738
  name = "polars-expr"
4687
- version = "0.45.1"
4688
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4739
+ version = "0.46.0"
4740
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4689
4741
  dependencies = [
4690
- "ahash",
4691
4742
  "bitflags",
4692
4743
  "hashbrown 0.15.5",
4693
4744
  "num-traits",
4694
- "once_cell",
4695
4745
  "polars-arrow",
4696
4746
  "polars-compute",
4697
4747
  "polars-core",
@@ -4703,12 +4753,13 @@ dependencies = [
4703
4753
  "polars-utils",
4704
4754
  "rand 0.8.5",
4705
4755
  "rayon",
4756
+ "recursive",
4706
4757
  ]
4707
4758
 
4708
4759
  [[package]]
4709
4760
  name = "polars-ffi"
4710
- version = "0.45.1"
4711
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4761
+ version = "0.46.0"
4762
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4712
4763
  dependencies = [
4713
4764
  "polars-arrow",
4714
4765
  "polars-core",
@@ -4716,10 +4767,9 @@ dependencies = [
4716
4767
 
4717
4768
  [[package]]
4718
4769
  name = "polars-io"
4719
- version = "0.45.1"
4720
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4770
+ version = "0.46.0"
4771
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4721
4772
  dependencies = [
4722
- "ahash",
4723
4773
  "async-trait",
4724
4774
  "atoi_simd",
4725
4775
  "blake3",
@@ -4737,8 +4787,7 @@ dependencies = [
4737
4787
  "memchr",
4738
4788
  "memmap2",
4739
4789
  "num-traits",
4740
- "object_store 0.11.2",
4741
- "once_cell",
4790
+ "object_store",
4742
4791
  "percent-encoding",
4743
4792
  "polars-arrow",
4744
4793
  "polars-core",
@@ -4765,10 +4814,9 @@ dependencies = [
4765
4814
 
4766
4815
  [[package]]
4767
4816
  name = "polars-json"
4768
- version = "0.45.1"
4769
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4817
+ version = "0.46.0"
4818
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4770
4819
  dependencies = [
4771
- "ahash",
4772
4820
  "chrono",
4773
4821
  "chrono-tz",
4774
4822
  "fallible-streaming-iterator",
@@ -4787,16 +4835,16 @@ dependencies = [
4787
4835
 
4788
4836
  [[package]]
4789
4837
  name = "polars-lazy"
4790
- version = "0.45.1"
4791
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4838
+ version = "0.46.0"
4839
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4792
4840
  dependencies = [
4793
- "ahash",
4794
4841
  "bitflags",
4795
4842
  "chrono",
4843
+ "either",
4796
4844
  "futures",
4797
4845
  "memchr",
4798
- "once_cell",
4799
4846
  "polars-arrow",
4847
+ "polars-compute",
4800
4848
  "polars-core",
4801
4849
  "polars-expr",
4802
4850
  "polars-io",
@@ -4816,8 +4864,8 @@ dependencies = [
4816
4864
 
4817
4865
  [[package]]
4818
4866
  name = "polars-mem-engine"
4819
- version = "0.45.1"
4820
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4867
+ version = "0.46.0"
4868
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4821
4869
  dependencies = [
4822
4870
  "futures",
4823
4871
  "memmap2",
@@ -4833,15 +4881,15 @@ dependencies = [
4833
4881
  "polars-utils",
4834
4882
  "pyo3",
4835
4883
  "rayon",
4884
+ "recursive",
4836
4885
  "tokio",
4837
4886
  ]
4838
4887
 
4839
4888
  [[package]]
4840
4889
  name = "polars-ops"
4841
- version = "0.45.1"
4842
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4890
+ version = "0.46.0"
4891
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4843
4892
  dependencies = [
4844
- "ahash",
4845
4893
  "aho-corasick",
4846
4894
  "argminmax",
4847
4895
  "base64",
@@ -4853,9 +4901,9 @@ dependencies = [
4853
4901
  "hex",
4854
4902
  "indexmap",
4855
4903
  "jsonpath_lib_polars_vendor",
4904
+ "libm",
4856
4905
  "memchr",
4857
4906
  "num-traits",
4858
- "once_cell",
4859
4907
  "polars-arrow",
4860
4908
  "polars-compute",
4861
4909
  "polars-core",
@@ -4878,10 +4926,9 @@ dependencies = [
4878
4926
 
4879
4927
  [[package]]
4880
4928
  name = "polars-parquet"
4881
- version = "0.45.1"
4882
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4929
+ version = "0.46.0"
4930
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4883
4931
  dependencies = [
4884
- "ahash",
4885
4932
  "async-stream",
4886
4933
  "base64",
4887
4934
  "brotli 7.0.0",
@@ -4916,8 +4963,8 @@ dependencies = [
4916
4963
 
4917
4964
  [[package]]
4918
4965
  name = "polars-pipe"
4919
- version = "0.45.1"
4920
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4966
+ version = "0.46.0"
4967
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4921
4968
  dependencies = [
4922
4969
  "crossbeam-channel",
4923
4970
  "crossbeam-queue",
@@ -4925,7 +4972,6 @@ dependencies = [
4925
4972
  "futures",
4926
4973
  "hashbrown 0.15.5",
4927
4974
  "num-traits",
4928
- "once_cell",
4929
4975
  "polars-arrow",
4930
4976
  "polars-compute",
4931
4977
  "polars-core",
@@ -4943,10 +4989,9 @@ dependencies = [
4943
4989
 
4944
4990
  [[package]]
4945
4991
  name = "polars-plan"
4946
- version = "0.45.1"
4947
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
4992
+ version = "0.46.0"
4993
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4948
4994
  dependencies = [
4949
- "ahash",
4950
4995
  "bitflags",
4951
4996
  "bytemuck",
4952
4997
  "bytes",
@@ -4958,7 +5003,6 @@ dependencies = [
4958
5003
  "libloading 0.8.8",
4959
5004
  "memmap2",
4960
5005
  "num-traits",
4961
- "once_cell",
4962
5006
  "percent-encoding",
4963
5007
  "polars-arrow",
4964
5008
  "polars-compute",
@@ -4981,10 +5025,9 @@ dependencies = [
4981
5025
 
4982
5026
  [[package]]
4983
5027
  name = "polars-python"
4984
- version = "0.45.1"
4985
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5028
+ version = "0.46.0"
5029
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
4986
5030
  dependencies = [
4987
- "ahash",
4988
5031
  "arboard",
4989
5032
  "bincode",
4990
5033
  "bytemuck",
@@ -4993,18 +5036,19 @@ dependencies = [
4993
5036
  "chrono-tz",
4994
5037
  "either",
4995
5038
  "flate2",
5039
+ "hashbrown 0.15.5",
4996
5040
  "itoa",
4997
5041
  "libc",
4998
5042
  "ndarray",
4999
5043
  "num-traits",
5000
5044
  "numpy",
5001
- "once_cell",
5002
5045
  "polars",
5003
5046
  "polars-arrow",
5004
5047
  "polars-compute",
5005
5048
  "polars-core",
5006
5049
  "polars-error",
5007
5050
  "polars-expr",
5051
+ "polars-ffi",
5008
5052
  "polars-io",
5009
5053
  "polars-lazy",
5010
5054
  "polars-mem-engine",
@@ -5018,14 +5062,13 @@ dependencies = [
5018
5062
  "rayon",
5019
5063
  "recursive",
5020
5064
  "serde_json",
5021
- "thiserror 2.0.15",
5022
5065
  "version_check",
5023
5066
  ]
5024
5067
 
5025
5068
  [[package]]
5026
5069
  name = "polars-row"
5027
- version = "0.45.1"
5028
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5070
+ version = "0.46.0"
5071
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
5029
5072
  dependencies = [
5030
5073
  "bitflags",
5031
5074
  "bytemuck",
@@ -5037,8 +5080,8 @@ dependencies = [
5037
5080
 
5038
5081
  [[package]]
5039
5082
  name = "polars-schema"
5040
- version = "0.45.1"
5041
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5083
+ version = "0.46.0"
5084
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
5042
5085
  dependencies = [
5043
5086
  "indexmap",
5044
5087
  "polars-error",
@@ -5049,9 +5092,10 @@ dependencies = [
5049
5092
 
5050
5093
  [[package]]
5051
5094
  name = "polars-sql"
5052
- version = "0.45.1"
5053
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5095
+ version = "0.46.0"
5096
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
5054
5097
  dependencies = [
5098
+ "bitflags",
5055
5099
  "hex",
5056
5100
  "polars-core",
5057
5101
  "polars-error",
@@ -5068,16 +5112,23 @@ dependencies = [
5068
5112
 
5069
5113
  [[package]]
5070
5114
  name = "polars-stream"
5071
- version = "0.45.1"
5072
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5115
+ version = "0.46.0"
5116
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
5073
5117
  dependencies = [
5118
+ "async-channel",
5119
+ "async-trait",
5074
5120
  "atomic-waker",
5121
+ "bitflags",
5122
+ "crossbeam-channel",
5075
5123
  "crossbeam-deque",
5124
+ "crossbeam-queue",
5076
5125
  "crossbeam-utils",
5077
5126
  "futures",
5078
5127
  "memmap2",
5079
5128
  "parking_lot",
5129
+ "percent-encoding",
5080
5130
  "pin-project-lite",
5131
+ "polars-arrow",
5081
5132
  "polars-core",
5082
5133
  "polars-error",
5083
5134
  "polars-expr",
@@ -5087,6 +5138,7 @@ dependencies = [
5087
5138
  "polars-parquet",
5088
5139
  "polars-plan",
5089
5140
  "polars-utils",
5141
+ "pyo3",
5090
5142
  "rand 0.8.5",
5091
5143
  "rayon",
5092
5144
  "recursive",
@@ -5097,8 +5149,8 @@ dependencies = [
5097
5149
 
5098
5150
  [[package]]
5099
5151
  name = "polars-time"
5100
- version = "0.45.1"
5101
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5152
+ version = "0.46.0"
5153
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
5102
5154
  dependencies = [
5103
5155
  "atoi_simd",
5104
5156
  "bytemuck",
@@ -5106,7 +5158,6 @@ dependencies = [
5106
5158
  "chrono-tz",
5107
5159
  "now",
5108
5160
  "num-traits",
5109
- "once_cell",
5110
5161
  "polars-arrow",
5111
5162
  "polars-compute",
5112
5163
  "polars-core",
@@ -5121,28 +5172,30 @@ dependencies = [
5121
5172
 
5122
5173
  [[package]]
5123
5174
  name = "polars-utils"
5124
- version = "0.45.1"
5125
- source = "git+https://github.com/mwiewior/polars.git?rev=49142b2e89dbc93888154dccfb7c6a4e4233c7b0#49142b2e89dbc93888154dccfb7c6a4e4233c7b0"
5175
+ version = "0.46.0"
5176
+ source = "git+https://github.com/mwiewior/polars.git?rev=da42ae21ca9c25bc14562e36e07cf02eafd620ee#da42ae21ca9c25bc14562e36e07cf02eafd620ee"
5126
5177
  dependencies = [
5127
- "ahash",
5128
5178
  "bincode",
5129
5179
  "bytemuck",
5130
5180
  "bytes",
5131
5181
  "compact_str",
5132
5182
  "flate2",
5183
+ "foldhash",
5133
5184
  "hashbrown 0.15.5",
5134
5185
  "indexmap",
5135
5186
  "libc",
5136
5187
  "memmap2",
5137
5188
  "num-traits",
5138
- "once_cell",
5139
5189
  "polars-error",
5140
5190
  "pyo3",
5141
5191
  "rand 0.8.5",
5142
5192
  "raw-cpuid",
5143
5193
  "rayon",
5194
+ "regex",
5195
+ "rmp-serde",
5144
5196
  "serde",
5145
5197
  "serde_json",
5198
+ "slotmap",
5146
5199
  "stacker",
5147
5200
  "sysinfo",
5148
5201
  "version_check",
@@ -5150,7 +5203,7 @@ dependencies = [
5150
5203
 
5151
5204
  [[package]]
5152
5205
  name = "polars_bio"
5153
- version = "0.11.0"
5206
+ version = "0.13.0"
5154
5207
  dependencies = [
5155
5208
  "arrow",
5156
5209
  "arrow-array",
@@ -5249,7 +5302,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
5249
5302
  checksum = "8a56d757972c98b346a9b766e3f02746cde6dd1cd1d1d563472929fdd74bec4d"
5250
5303
  dependencies = [
5251
5304
  "anyhow",
5252
- "itertools 0.14.0",
5305
+ "itertools",
5253
5306
  "proc-macro2",
5254
5307
  "quote",
5255
5308
  "syn 2.0.106",
@@ -5765,6 +5818,28 @@ version = "1.0.3"
5765
5818
  source = "registry+https://github.com/rust-lang/crates.io-index"
5766
5819
  checksum = "3582f63211428f83597b51b2ddb88e2a91a9d52d12831f9d08f5e624e8977422"
5767
5820
 
5821
+ [[package]]
5822
+ name = "rmp"
5823
+ version = "0.8.14"
5824
+ source = "registry+https://github.com/rust-lang/crates.io-index"
5825
+ checksum = "228ed7c16fa39782c3b3468e974aec2795e9089153cd08ee2e9aefb3613334c4"
5826
+ dependencies = [
5827
+ "byteorder",
5828
+ "num-traits",
5829
+ "paste",
5830
+ ]
5831
+
5832
+ [[package]]
5833
+ name = "rmp-serde"
5834
+ version = "1.3.0"
5835
+ source = "registry+https://github.com/rust-lang/crates.io-index"
5836
+ checksum = "52e599a477cf9840e92f2cde9a7189e67b42c57532749bf90aea6ec10facd4db"
5837
+ dependencies = [
5838
+ "byteorder",
5839
+ "rmp",
5840
+ "serde",
5841
+ ]
5842
+
5768
5843
  [[package]]
5769
5844
  name = "rsa"
5770
5845
  version = "0.9.8"
@@ -6027,7 +6102,7 @@ checksum = "1bc711410fbe7399f390ca1c3b60ad0f53f80e95c5eb935e52268a0e2cd49acc"
6027
6102
  [[package]]
6028
6103
  name = "sequila-core"
6029
6104
  version = "0.1.0"
6030
- source = "git+https://github.com/biodatageeks/sequila-native.git?rev=21eb221d65fe2514b6c83d386adb33540828d22d#21eb221d65fe2514b6c83d386adb33540828d22d"
6105
+ source = "git+https://github.com/biodatageeks/sequila-native.git?rev=745d40f77da7ced5d540f9285eb5123ba12682ff#745d40f77da7ced5d540f9285eb5123ba12682ff"
6031
6106
  dependencies = [
6032
6107
  "ahash",
6033
6108
  "async-trait",
@@ -6042,6 +6117,7 @@ dependencies = [
6042
6117
  "parking_lot",
6043
6118
  "rand 0.8.5",
6044
6119
  "rust-lapper",
6120
+ "superintervals",
6045
6121
  "tokio",
6046
6122
  ]
6047
6123
 
@@ -6136,6 +6212,16 @@ version = "1.3.0"
6136
6212
  source = "registry+https://github.com/rust-lang/crates.io-index"
6137
6213
  checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
6138
6214
 
6215
+ [[package]]
6216
+ name = "signal-hook"
6217
+ version = "0.3.18"
6218
+ source = "registry+https://github.com/rust-lang/crates.io-index"
6219
+ checksum = "d881a16cf4426aa584979d30bd82cb33429027e42122b169753d6ef1085ed6e2"
6220
+ dependencies = [
6221
+ "libc",
6222
+ "signal-hook-registry",
6223
+ ]
6224
+
6139
6225
  [[package]]
6140
6226
  name = "signal-hook-registry"
6141
6227
  version = "1.4.6"
@@ -6209,6 +6295,15 @@ version = "1.0.1"
6209
6295
  source = "registry+https://github.com/rust-lang/crates.io-index"
6210
6296
  checksum = "56199f7ddabf13fe5074ce809e7d3f42b42ae711800501b5b16ea82ad029c39d"
6211
6297
 
6298
+ [[package]]
6299
+ name = "skiplist"
6300
+ version = "0.5.1"
6301
+ source = "registry+https://github.com/rust-lang/crates.io-index"
6302
+ checksum = "0eec25f46463fcdc5e02f388c2780b1b58e01be81a8378e62ec60931beccc3f6"
6303
+ dependencies = [
6304
+ "rand 0.8.5",
6305
+ ]
6306
+
6212
6307
  [[package]]
6213
6308
  name = "slab"
6214
6309
  version = "0.4.11"
@@ -6230,27 +6325,6 @@ version = "1.15.1"
6230
6325
  source = "registry+https://github.com/rust-lang/crates.io-index"
6231
6326
  checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03"
6232
6327
 
6233
- [[package]]
6234
- name = "snafu"
6235
- version = "0.8.6"
6236
- source = "registry+https://github.com/rust-lang/crates.io-index"
6237
- checksum = "320b01e011bf8d5d7a4a4a4be966d9160968935849c83b918827f6a435e7f627"
6238
- dependencies = [
6239
- "snafu-derive",
6240
- ]
6241
-
6242
- [[package]]
6243
- name = "snafu-derive"
6244
- version = "0.8.6"
6245
- source = "registry+https://github.com/rust-lang/crates.io-index"
6246
- checksum = "1961e2ef424c1424204d3a5d6975f934f56b6d50ff5732382d84ebf460e147f7"
6247
- dependencies = [
6248
- "heck",
6249
- "proc-macro2",
6250
- "quote",
6251
- "syn 2.0.106",
6252
- ]
6253
-
6254
6328
  [[package]]
6255
6329
  name = "snap"
6256
6330
  version = "1.1.1"
@@ -6407,6 +6481,15 @@ version = "2.6.1"
6407
6481
  source = "registry+https://github.com/rust-lang/crates.io-index"
6408
6482
  checksum = "13c2bddecc57b384dee18652358fb23172facb8a2c51ccc10d74c157bdea3292"
6409
6483
 
6484
+ [[package]]
6485
+ name = "superintervals"
6486
+ version = "0.3.6"
6487
+ source = "git+https://github.com/biodatageeks/sequila-native.git?rev=745d40f77da7ced5d540f9285eb5123ba12682ff#745d40f77da7ced5d540f9285eb5123ba12682ff"
6488
+ dependencies = [
6489
+ "aligned-vec",
6490
+ "serde",
6491
+ ]
6492
+
6410
6493
  [[package]]
6411
6494
  name = "syn"
6412
6495
  version = "1.0.109"