pninexus 3.2.0__tar.gz → 3.2.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pninexus-3.2.1/PKG-INFO +173 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/conf.py +1 -1
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/installation.rst +25 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/setup.py +19 -10
- pninexus-3.2.1/src/pninexus.egg-info/PKG-INFO +173 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus.egg-info/SOURCES.txt +1 -0
- pninexus-3.2.1/src/pninexus.egg-info/requires.txt +1 -0
- pninexus-3.2.0/PKG-INFO +0 -27
- pninexus-3.2.0/src/pninexus.egg-info/PKG-INFO +0 -27
- {pninexus-3.2.0 → pninexus-3.2.1}/MANIFEST.in +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/README +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/build_tools/ConanConfig.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/build_tools/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/build_tools/build_configuration.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/build_tools/build_configuration_builder.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/build_tools/cpp_extension_factory.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/Makefile +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/_static/hdf5_basic_tree.svg +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/_templates/versions.html +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/api_guide.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/array.pdf +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/array.png +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/array.svg +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/array_grow.pdf +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/array_grow.png +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/array_grow.svg +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/external_link.pdf +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/external_link.svg +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/h5cpp_attributes.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/h5cpp_dataset.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/h5cpp_dataspace.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/h5cpp_datatypes.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/h5cpp_files.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/h5cpp_groups.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/index.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/link.pdf +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/link.svg +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/make.bat +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_attributes.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_fields.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_files.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_groups.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_links.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_path.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/nexus_xml.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/users_guide.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/using_h5cpp.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/doc/sphinx/using_nexus.rst +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/pkgconfig.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/setup.cfg +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/_h5cpp.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/attribute/attribute.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/boost_filesystem_path_conversion.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/boost_filesystem_path_conversion.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/common/converters.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/common/converters.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/common/io.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/dataspace/dataspace.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/dataspace/selections.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/dataspace/wrappers.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/datatype/datatype.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/dimensions_conversion.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/dimensions_conversion.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/errors.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/errors.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/file/file.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/filter/filter.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/iterator_wrapper.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/node/dataset.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/node/functions.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/node/nodes.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/node/wrappers.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/array_adapter.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/array_adapter.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/array_factory.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/array_factory.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/dimensions.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/dimensions.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/hdf5_fixed_strings_support.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/hdf5_support.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/hdf5_variable_strings_support.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/numpy/numpy.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/chunk_cache_parameters.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/class_wrappers.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/copy_flag_wrapper.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/creation_order.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/enumeration_wrappers.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/property.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/h5cpp/property/wrapper_generators.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/element_dict_converter.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/element_dict_converter.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/factories.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/list_converters.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/list_converters.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/nexus.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/path.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/predicates.cpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/cpp/nexus/wrappers.hpp +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/attribute/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/dataspace/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/datatype/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/file/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/filter/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/node/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/h5cpp/property/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus/nexus/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus.egg-info/dependency_links.txt +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/src/pninexus.egg-info/top_level.txt +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/data_generator.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/attributes_all.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/is_root_element_ttest.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/read.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/scalar.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/scalar_string_setget.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/test2.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/test3.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/ttest_attributes.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/debug/ttest_fields.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/attribute_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/attribute_tests/attribute_creation_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/attribute_tests/attribute_io_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/dataspace_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/dataspace_tests/scalar_dataspace_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/dataspace_tests/simple_dataspace_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/datatype_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/datatype_tests/predefined_type_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/file_creation_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/file_image_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/file_open_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/filter_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/filter_tests/creation_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/group_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/group_tests/group_construction_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/copy_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/dataset_direct_chunk_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/dataset_extent_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/dataset_io_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/dataset_partial_io_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/group_creation_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/h5py_compat_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/link_iteration_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/node_iterator_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/node_tests/virtual_dataset_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/path_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/property_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/property_tests/chunk_cache_parameters_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/property_tests/copy_flags_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/property_tests/creation_order_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/h5cpp_tests/property_tests/object_copy_list_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/io_test_utils.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/mem_log_view.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/memory_check.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/NexusPathTests.xml +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/detector.xml +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/factory_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/file_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/path_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/nexus_tests/xml_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/regression_tests/__init__.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/regression_tests/issue_18_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/regression_tests/issue_23_test.py +0 -0
- {pninexus-3.2.0 → pninexus-3.2.1}/test/regression_tests/issue_5_test.py +0 -0
pninexus-3.2.1/PKG-INFO
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Metadata-Version: 1.2
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Name: pninexus
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Version: 3.2.1
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Summary: Python wrapper for the H5CPP and PNI libraries
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Home-page: https://github.com/pni-libraries/python-pninexus
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Author: Eugen Wintersberger
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Author-email: eugen.wintersberger@desy.de
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Maintainer: Eugen Wintersberger, Jan Kotanski
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Maintainer-email: jan.kotanski@desy.de
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License: GPLv2
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Description: Python bindings for PNI/NeXus and h5cpp
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=======================================
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|github workflow|
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.. |github workflow| image:: https://github.com/pni-libraries/python-pninexus/actions/workflows/tests.yml/badge.svg
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:target: https://github.com/pni-libraries/python-pninexus/actions
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.. |docs| image:: https://img.shields.io/badge/Documentation-webpages-ADD8E6.svg
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:target: https://pni-libraries.github.io/python-pninexus/index.html
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.. |Pypi Version| image:: https://img.shields.io/pypi/v/pninexus.svg
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:target: https://pypi.python.org/pypi/pninexus
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.. |Python Versions| image:: https://img.shields.io/pypi/pyversions/pninexus.svg
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:target: https://pypi.python.org/pypi/pninexus/
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:alt:
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Python wrapper for the `h5cpp <https://github.com/ess-dmsc/h5cpp>`__ and
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`libpninexus <https://github.com/pni-libraries/libpninexus>`__ C++
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libraries. The wrapper supports Python 2.X and 3.X.
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Installation
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------------
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Required packages
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~~~~~~~~~~~~~~~~~
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- *h5cpp* >= 0.5.0
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- *libpninexus* >= 3.2.0
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- python setuptools
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- numpy
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- c++ compiler
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- boost-python library
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- python sphinx to build the documentation
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Install from sources
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~~~~~~~~~~~~~~~~~~~~
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The code can be built with
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::
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$ python setup.py install
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For those who are still running on the old interface it is maybe whise
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to install this package in a custom location with something like this
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::
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$ python setup.py install --prefix=<path to installation prefix>
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To build the documentation use
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::
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$ python setup.py build_sphinx
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The resulting documentation can be found below ``build/sphinx/html`` in
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the root directory of the source distribution.
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Finally, the package can be tested using
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::
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$ python setup.py test
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For Python3 just replace python with python3 in the above instructions.
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Debian and Ubuntu packages
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~~~~~~~~~~~~~~~~~~~~~~~~~~
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Debian ``bookworm``, ``bullseye``, ``buster`` or Ubuntu ``lunar``,
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``jammy``, ``focal`` packages can be found in the HDRI repository.
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To install the debian packages, add the PGP repository key
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::
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$ sudo su
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$ curl -s http://repos.pni-hdri.de/debian_repo.pub.gpg | gpg --no-default-keyring --keyring gnupg-ring:/etc/apt/trusted.gpg.d/debian-hdri-repo.gpg --import
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$ chmod 644 /etc/apt/trusted.gpg.d/debian-hdri-repo.gpg
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and then download the corresponding source list, e.g. for ``bullseye``
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::
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$ cd /etc/apt/sources.list.d
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$ wget http://repos.pni-hdri.de/bullseye-pni-hdri.list
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or ``jammy``
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::
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$ cd /etc/apt/sources.list.d
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$ wget http://repos.pni-hdri.de/jammy-pni-hdri.list
|
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|
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respectively.
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Finally,
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::
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$ apt-get update
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$ apt-get install python-pninexus
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or
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::
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$ apt-get update
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$ apt-get install python3-pninexus
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+
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for python3.
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Manylinux wheels from PyPI
|
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~~~~~~~~~~~~~~~~~~~~~~~~~~
|
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+
|
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To install pninexus in a conda or python virtual environment manylinux pip wheels can be used, e.g.
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+
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.. code-block:: console
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+
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$ python3 -m venv myvenv
|
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$ . myvenv/bin/activate
|
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|
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$ pip install pip --upgrade
|
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$ pip install numpy
|
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+
|
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$ pip install pninexus -U wheel
|
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+
|
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For some versions of wheels numpy needs to be installed in advance.
|
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+
|
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+
|
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+
|
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+
More information can be found at `online
|
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+
documentation <https://pni-libraries.github.io/python-pninexus/index.html>`__.
|
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+
|
157
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+
Changes for a specific version of libpninexus can be found at
|
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+
`CHANGELOG <https://github.com/pni-libraries/python-pninexus/blob/develop/CHANGELOG.md>`__.
|
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+
|
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+
|
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+
Keywords: h5cpp hdf5 python photon science detector
|
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+
Platform: UNKNOWN
|
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+
Classifier: Development Status :: 5 - Production/Stable
|
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Classifier: Intended Audience :: Science/Research
|
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Classifier: Topic :: Scientific/Engineering :: Physics
|
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Classifier: Topic :: Software Development :: Libraries :: Python Modules
|
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Classifier: License :: OSI Approved :: GNU General Public License v2 (GPLv2)
|
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Classifier: Programming Language :: Python :: 2.7
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Classifier: Programming Language :: Python :: 3.7
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Classifier: Programming Language :: Python :: 3.8
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.10
|
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Classifier: Programming Language :: Python :: 3.11
|
@@ -99,3 +99,28 @@ or
|
|
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99
|
$ apt-get install python3-pninexus
|
100
100
|
|
101
101
|
to install the the PNI/NeXus package for python or python3, respectively.
|
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+
|
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+
Manylinux wheels from PyPI
|
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+
==========================
|
105
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+
|
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+
To install pninexus in a conda or python virtual environment manylinux pip wheels can be used, e.g.
|
107
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+
|
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+
.. code-block:: console
|
109
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+
|
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|
+
$ python3 -m venv myvenv
|
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$ . myvenv/bin/activate
|
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+
|
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+
$ pip install pip --upgrade
|
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$ pip install numpy
|
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+
|
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|
+
$ pip install pninexus -U wheel
|
117
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+
|
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|
+
For some versions of wheels numpy needs to be installed in advance.
|
119
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+
|
120
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+
|
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+
|
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|
+
More information can be found at `online
|
123
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+
documentation <https://pni-libraries.github.io/python-pninexus/index.html>`__.
|
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+
|
125
|
+
Changes for a specific version of libpninexus can be found at
|
126
|
+
`CHANGELOG <https://github.com/pni-libraries/python-pninexus/blob/develop/CHANGELOG.md>`__.
|
@@ -1,5 +1,6 @@
|
|
1
1
|
# setup script for python-pninexus
|
2
2
|
from __future__ import print_function
|
3
|
+
import codecs
|
3
4
|
import sys
|
4
5
|
import os
|
5
6
|
import os.path
|
@@ -14,13 +15,13 @@ from build_tools import (CppExtensionFactory,
|
|
14
15
|
cmdclass = {}
|
15
16
|
try:
|
16
17
|
from sphinx.setup_command import BuildDoc
|
17
|
-
cmdclass['build_sphinx'] =
|
18
|
+
cmdclass['build_sphinx'] = BuildDoc
|
18
19
|
except ImportError:
|
19
20
|
print('WARNING: sphinx is not available, not building docs')
|
20
21
|
|
21
22
|
name = "pninexus"
|
22
|
-
version = "3.2.
|
23
|
-
release = "3.2.
|
23
|
+
version = "3.2.1"
|
24
|
+
release = "3.2.1"
|
24
25
|
# release = "3.2"
|
25
26
|
|
26
27
|
if release.count(".") == 1:
|
@@ -29,6 +30,17 @@ else:
|
|
29
30
|
docs_release = release
|
30
31
|
|
31
32
|
|
33
|
+
def read(fname):
|
34
|
+
""" read the file
|
35
|
+
|
36
|
+
:param fname: readme file name
|
37
|
+
:type fname: :obj:`str`
|
38
|
+
"""
|
39
|
+
with codecs.open(os.path.join('.', fname), encoding='utf-8') as f:
|
40
|
+
long_description = f.read()
|
41
|
+
return long_description
|
42
|
+
|
43
|
+
|
32
44
|
def get_build_dir():
|
33
45
|
build_dir = "lib.{platform}-{version[0]}.{version[1]}"
|
34
46
|
|
@@ -205,13 +217,12 @@ setup(
|
|
205
217
|
author="Eugen Wintersberger",
|
206
218
|
author_email="eugen.wintersberger@desy.de",
|
207
219
|
description="Python wrapper for the H5CPP and PNI libraries",
|
208
|
-
long_description=
|
209
|
-
"libraries libpninexus and libh5cpp.",
|
220
|
+
long_description=read('README.rst'),
|
210
221
|
maintainer="Eugen Wintersberger, Jan Kotanski",
|
211
222
|
maintainer_email="jan.kotanski@desy.de",
|
212
223
|
license="GPLv2",
|
213
224
|
version=release,
|
214
|
-
|
225
|
+
install_requires=["numpy"],
|
215
226
|
ext_modules=[
|
216
227
|
h5cpp_core_ext,
|
217
228
|
h5cpp_attribute_ext,
|
@@ -242,13 +253,11 @@ setup(
|
|
242
253
|
'Topic :: Software Development :: Libraries :: Python Modules',
|
243
254
|
'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
|
244
255
|
'Programming Language :: Python :: 2.7',
|
245
|
-
'Programming Language :: Python :: 3',
|
246
|
-
'Programming Language :: Python :: 3.4',
|
247
|
-
'Programming Language :: Python :: 3.5',
|
248
|
-
'Programming Language :: Python :: 3.6',
|
249
256
|
'Programming Language :: Python :: 3.7',
|
250
257
|
'Programming Language :: Python :: 3.8',
|
251
258
|
'Programming Language :: Python :: 3.9',
|
259
|
+
'Programming Language :: Python :: 3.10',
|
260
|
+
'Programming Language :: Python :: 3.11',
|
252
261
|
],
|
253
262
|
test_suite="test",
|
254
263
|
test_loader="unittest:TestLoader",
|
@@ -0,0 +1,173 @@
|
|
1
|
+
Metadata-Version: 1.2
|
2
|
+
Name: pninexus
|
3
|
+
Version: 3.2.1
|
4
|
+
Summary: Python wrapper for the H5CPP and PNI libraries
|
5
|
+
Home-page: https://github.com/pni-libraries/python-pninexus
|
6
|
+
Author: Eugen Wintersberger
|
7
|
+
Author-email: eugen.wintersberger@desy.de
|
8
|
+
Maintainer: Eugen Wintersberger, Jan Kotanski
|
9
|
+
Maintainer-email: jan.kotanski@desy.de
|
10
|
+
License: GPLv2
|
11
|
+
Description: Python bindings for PNI/NeXus and h5cpp
|
12
|
+
=======================================
|
13
|
+
|
14
|
+
|
15
|
+
|github workflow|
|
16
|
+
|docs|
|
17
|
+
|Pypi Version|
|
18
|
+
|Python Versions|
|
19
|
+
|
20
|
+
.. |github workflow| image:: https://github.com/pni-libraries/python-pninexus/actions/workflows/tests.yml/badge.svg
|
21
|
+
:target: https://github.com/pni-libraries/python-pninexus/actions
|
22
|
+
:alt:
|
23
|
+
|
24
|
+
.. |docs| image:: https://img.shields.io/badge/Documentation-webpages-ADD8E6.svg
|
25
|
+
:target: https://pni-libraries.github.io/python-pninexus/index.html
|
26
|
+
:alt:
|
27
|
+
|
28
|
+
.. |Pypi Version| image:: https://img.shields.io/pypi/v/pninexus.svg
|
29
|
+
:target: https://pypi.python.org/pypi/pninexus
|
30
|
+
:alt:
|
31
|
+
|
32
|
+
.. |Python Versions| image:: https://img.shields.io/pypi/pyversions/pninexus.svg
|
33
|
+
:target: https://pypi.python.org/pypi/pninexus/
|
34
|
+
:alt:
|
35
|
+
|
36
|
+
|
37
|
+
Python wrapper for the `h5cpp <https://github.com/ess-dmsc/h5cpp>`__ and
|
38
|
+
`libpninexus <https://github.com/pni-libraries/libpninexus>`__ C++
|
39
|
+
libraries. The wrapper supports Python 2.X and 3.X.
|
40
|
+
|
41
|
+
Installation
|
42
|
+
------------
|
43
|
+
|
44
|
+
Required packages
|
45
|
+
~~~~~~~~~~~~~~~~~
|
46
|
+
|
47
|
+
- *h5cpp* >= 0.5.0
|
48
|
+
- *libpninexus* >= 3.2.0
|
49
|
+
- python setuptools
|
50
|
+
- numpy
|
51
|
+
- c++ compiler
|
52
|
+
- boost-python library
|
53
|
+
- python sphinx to build the documentation
|
54
|
+
|
55
|
+
Install from sources
|
56
|
+
~~~~~~~~~~~~~~~~~~~~
|
57
|
+
|
58
|
+
The code can be built with
|
59
|
+
|
60
|
+
::
|
61
|
+
|
62
|
+
$ python setup.py install
|
63
|
+
|
64
|
+
For those who are still running on the old interface it is maybe whise
|
65
|
+
to install this package in a custom location with something like this
|
66
|
+
|
67
|
+
::
|
68
|
+
|
69
|
+
$ python setup.py install --prefix=<path to installation prefix>
|
70
|
+
|
71
|
+
To build the documentation use
|
72
|
+
|
73
|
+
::
|
74
|
+
|
75
|
+
$ python setup.py build_sphinx
|
76
|
+
|
77
|
+
The resulting documentation can be found below ``build/sphinx/html`` in
|
78
|
+
the root directory of the source distribution.
|
79
|
+
|
80
|
+
Finally, the package can be tested using
|
81
|
+
|
82
|
+
::
|
83
|
+
|
84
|
+
$ python setup.py test
|
85
|
+
|
86
|
+
For Python3 just replace python with python3 in the above instructions.
|
87
|
+
|
88
|
+
Debian and Ubuntu packages
|
89
|
+
~~~~~~~~~~~~~~~~~~~~~~~~~~
|
90
|
+
|
91
|
+
Debian ``bookworm``, ``bullseye``, ``buster`` or Ubuntu ``lunar``,
|
92
|
+
``jammy``, ``focal`` packages can be found in the HDRI repository.
|
93
|
+
|
94
|
+
To install the debian packages, add the PGP repository key
|
95
|
+
|
96
|
+
::
|
97
|
+
|
98
|
+
$ sudo su
|
99
|
+
$ curl -s http://repos.pni-hdri.de/debian_repo.pub.gpg | gpg --no-default-keyring --keyring gnupg-ring:/etc/apt/trusted.gpg.d/debian-hdri-repo.gpg --import
|
100
|
+
$ chmod 644 /etc/apt/trusted.gpg.d/debian-hdri-repo.gpg
|
101
|
+
|
102
|
+
and then download the corresponding source list, e.g. for ``bullseye``
|
103
|
+
|
104
|
+
::
|
105
|
+
|
106
|
+
$ cd /etc/apt/sources.list.d
|
107
|
+
$ wget http://repos.pni-hdri.de/bullseye-pni-hdri.list
|
108
|
+
|
109
|
+
or ``jammy``
|
110
|
+
|
111
|
+
::
|
112
|
+
|
113
|
+
$ cd /etc/apt/sources.list.d
|
114
|
+
$ wget http://repos.pni-hdri.de/jammy-pni-hdri.list
|
115
|
+
|
116
|
+
respectively.
|
117
|
+
|
118
|
+
Finally,
|
119
|
+
|
120
|
+
::
|
121
|
+
|
122
|
+
$ apt-get update
|
123
|
+
$ apt-get install python-pninexus
|
124
|
+
|
125
|
+
or
|
126
|
+
|
127
|
+
::
|
128
|
+
|
129
|
+
$ apt-get update
|
130
|
+
$ apt-get install python3-pninexus
|
131
|
+
|
132
|
+
for python3.
|
133
|
+
|
134
|
+
|
135
|
+
Manylinux wheels from PyPI
|
136
|
+
~~~~~~~~~~~~~~~~~~~~~~~~~~
|
137
|
+
|
138
|
+
To install pninexus in a conda or python virtual environment manylinux pip wheels can be used, e.g.
|
139
|
+
|
140
|
+
.. code-block:: console
|
141
|
+
|
142
|
+
$ python3 -m venv myvenv
|
143
|
+
$ . myvenv/bin/activate
|
144
|
+
|
145
|
+
$ pip install pip --upgrade
|
146
|
+
$ pip install numpy
|
147
|
+
|
148
|
+
$ pip install pninexus -U wheel
|
149
|
+
|
150
|
+
For some versions of wheels numpy needs to be installed in advance.
|
151
|
+
|
152
|
+
|
153
|
+
|
154
|
+
More information can be found at `online
|
155
|
+
documentation <https://pni-libraries.github.io/python-pninexus/index.html>`__.
|
156
|
+
|
157
|
+
Changes for a specific version of libpninexus can be found at
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`CHANGELOG <https://github.com/pni-libraries/python-pninexus/blob/develop/CHANGELOG.md>`__.
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Keywords: h5cpp hdf5 python photon science detector
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Metadata-Version: 1.2
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Name: pninexus
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Version: 3.2.0
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Summary: Python wrapper for the H5CPP and PNI libraries
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Home-page: https://github.com/pni-libraries/python-pninexus
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Author: Eugen Wintersberger
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Maintainer: Eugen Wintersberger, Jan Kotanski
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License: GPLv2
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Description: This package provides wrappers for the PNI C++ libraries libpninexus and libh5cpp.
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Version: 3.2.0
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Summary: Python wrapper for the H5CPP and PNI libraries
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Author: Eugen Wintersberger
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Keywords: h5cpp hdf5 python photon science detector
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