pmprov 0.1.0__tar.gz

pmprov-0.1.0/LICENSE

@@ -0,0 +1,187 @@
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pmprov-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: pmprov
+Version: 0.1.0
+Summary: Analytic provenance tracking middleware for exploratory process mining.
+Requires-Python: >=3.13
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: ipywidgets==8.1.8
+Requires-Dist: marimo==0.23.10
+Requires-Dist: matplotlib==3.11.0
+Requires-Dist: pandas==3.0.3
+Requires-Dist: plotly==6.8.0
+Requires-Dist: pyarrow==24.0.0
+Requires-Dist: pydantic==2.13.4
+Provides-Extra: duckdb
+Requires-Dist: duckdb==1.5.4; extra == "duckdb"
+Provides-Extra: parquet
+Requires-Dist: pyarrow==24.0.0; extra == "parquet"
+Provides-Extra: graph
+Requires-Dist: networkx==3.6.1; extra == "graph"
+Requires-Dist: matplotlib==3.11.0; extra == "graph"
+Provides-Extra: widgets
+Requires-Dist: ipywidgets==8.1.8; extra == "widgets"
+Provides-Extra: full
+Requires-Dist: duckdb==1.5.4; extra == "full"
+Requires-Dist: pyarrow==24.0.0; extra == "full"
+Requires-Dist: networkx==3.6.1; extra == "full"
+Requires-Dist: matplotlib==3.11.0; extra == "full"
+Requires-Dist: ipywidgets==8.1.8; extra == "full"
+Dynamic: license-file
+
+# pmprov
+
+[![Ask DeepWiki](https://deepwiki.com/badge.svg)](https://deepwiki.com/alvarobernal2412/pmprov)
+
+**Analytic provenance tracking middleware for exploratory process mining notebooks.**
+
+`pmprov` automatically records every meaningful decision an analyst makes during a Jupyter or Marimo session — which functions were called, with what arguments, on which data, and how the data changed — without requiring any modification to analyst code.
+
+---
+
+## How it works
+
+```
+Your cell code  →  AST rewriter  →  trace_step()  →  DuckDB/SQLite + Parquet
+                   (transparent)     (non-blocking)
+```
+
+Every top-level function call is intercepted at the AST level, wrapped with a lightweight tracer, and recorded as a node in a provenance tree. The analyst's variables contain exactly the same values they would without the middleware.
+
+---
+
+## Getting started
+
+**Prerequisites:** Python ≥ 3.13, [`uv`](https://docs.astral.sh/uv/)
+
+```bash
+git clone https://github.com/alvarobernal2412/pmprov.git
+cd pmprov
+uv pip install -e ".[full]"
+```
+
+**In a Jupyter notebook:**
+
+```python
+from tracker import init_jupyter, operation_type
+import pandas as pd
+import pm4py
+
+# Register semantic labels for third-party functions (optional but recommended)
+operation_type("data_loading",      pd.read_csv)
+operation_type("process_discovery", pm4py.discover_petri_net_inductive)
+
+# Start tracking — one call, no other changes to your code
+rt = init_jupyter(history_name="My analysis")
+
+# Your normal analysis code below — provenance is captured automatically
+event_log = pd.read_csv("data/log.csv", parse_dates=["time:timestamp"])
+net, im, fm = pm4py.discover_petri_net_inductive(event_log)
+```
+
+**In a Marimo notebook:**
+
+Marimo support requires a one-time setup step. The middleware patches Marimo's AST compiler at Python startup via `sitecustomize.py`, which must be placed in your virtual environment (already in place if installed via `uv`).
+
+**Structural requirement:** Marimo's reactive DAG is built from the original cell code *before* the AST rewriter runs. This means the rewriter cannot inject dependency edges automatically. To guarantee that `init_marimo()` runs before any tracked cell, **combine your path setup and `init_marimo()` call in one cell** and export all imports (`pd`, constants, etc.) from it. Downstream cells then depend on those names naturally, which implicitly orders them after init — no need to add `rt` to every cell's parameters.
+
+```python
+# ── Setup + init (one cell) ───────────────────────────────────────────────────
+@app.cell
+def _():
+    import sys, pandas as pd
+    from pathlib import Path
+    from tracker import init_marimo, operation_type
+
+    # ... path setup ...
+
+    rt = init_marimo(history_name="My analysis")
+    operation_type("data_loading", pd.read_csv)
+
+    def settle():
+        rt.storage._executor.submit(lambda: None).result()
+
+    return pd, rt, settle, DATA_FILE  # export everything downstream cells need
+
+
+# ── Analysis cells — no `rt` needed in params ─────────────────────────────────
+@app.cell
+def _(DATA_FILE, pd):          # depends on pd + DATA_FILE → init already ran
+    event_log = pd.read_csv(DATA_FILE, parse_dates=["time:timestamp"])
+    return (event_log,)
+```
+
+Run with:
+```bash
+uv run marimo run examples/marimo/provenance_demo.py
+# or for interactive editing:
+uv run marimo edit examples/marimo/provenance_demo.py
+```
+
+> **Note:** Provenance capture works in Marimo. Some introspection features (interactive widget, manual checkout) are not yet validated in the Marimo environment.
+
+**Inspect the provenance graph:**
+
+```python
+rt.list_states()           # table of all recorded steps
+rt.show_graph()            # static matplotlib tree
+rt.show_graph_widget()     # interactive Jupyter widget (Jupyter only)
+```
+
+**Branch from a past state:**
+
+```python
+branch = rt.checkout("paste-state-id-here", branch_name="experiment-v2")
+```
+
+See [`examples/jupyter/provenance_demo.ipynb`](examples/jupyter/provenance_demo.ipynb) for a full Jupyter walkthrough and [`examples/marimo/provenance_demo.py`](examples/marimo/provenance_demo.py) for the Marimo equivalent, both using the RTFM dataset.
+
+---
+
+## Optional extras
+
+| Extra | What it adds |
+|---|---|
+| `duckdb` | DuckDB storage backend (preferred) |
+| `parquet` | DataFrame artifact persistence via pyarrow |
+| `graph` | `show_graph()` via networkx + matplotlib |
+| `widgets` | `show_graph_widget()` interactive panel |
+| `marimo` | Marimo notebook support |
+| `full` | Everything above |
+
+```bash
+uv pip install -e ".[full]"
+```
+
+---
+
+## Project structure
+
+```
+models/    Pydantic v2 domain models (provenance entities)
+tracker/   Runtime middleware (AST rewriter, tracer, storage)
+examples/  Demo notebook + RTFM dataset helpers
+```
+
+---
+
+## Running tests
+
+```bash
+uv sync --all-extras --dev
+uv run pytest
+```
+
+## Git hooks (optional)
+
+Enforces the test suite and conventional commit format (≤ 45 chars) on every commit:
+
+```bash
+uv run pre-commit install && uv run pre-commit install --hook-type commit-msg
+```
+
+Skip this step if you prefer to run checks manually.
+
+---
+
+## Contributing
+
+See [CONTRIBUTING.md](CONTRIBUTING.md).
+
+## License
+
+Apache 2.0 — see [LICENSE](LICENSE).

pmprov-0.1.0/README.md

@@ -0,0 +1,162 @@
+# pmprov
+
+[![Ask DeepWiki](https://deepwiki.com/badge.svg)](https://deepwiki.com/alvarobernal2412/pmprov)
+
+**Analytic provenance tracking middleware for exploratory process mining notebooks.**
+
+`pmprov` automatically records every meaningful decision an analyst makes during a Jupyter or Marimo session — which functions were called, with what arguments, on which data, and how the data changed — without requiring any modification to analyst code.
+
+---
+
+## How it works
+
+```
+Your cell code  →  AST rewriter  →  trace_step()  →  DuckDB/SQLite + Parquet
+                   (transparent)     (non-blocking)
+```
+
+Every top-level function call is intercepted at the AST level, wrapped with a lightweight tracer, and recorded as a node in a provenance tree. The analyst's variables contain exactly the same values they would without the middleware.
+
+---
+
+## Getting started
+
+**Prerequisites:** Python ≥ 3.13, [`uv`](https://docs.astral.sh/uv/)
+
+```bash
+git clone https://github.com/alvarobernal2412/pmprov.git
+cd pmprov
+uv pip install -e ".[full]"
+```
+
+**In a Jupyter notebook:**
+
+```python
+from tracker import init_jupyter, operation_type
+import pandas as pd
+import pm4py
+
+# Register semantic labels for third-party functions (optional but recommended)
+operation_type("data_loading",      pd.read_csv)
+operation_type("process_discovery", pm4py.discover_petri_net_inductive)
+
+# Start tracking — one call, no other changes to your code
+rt = init_jupyter(history_name="My analysis")
+
+# Your normal analysis code below — provenance is captured automatically
+event_log = pd.read_csv("data/log.csv", parse_dates=["time:timestamp"])
+net, im, fm = pm4py.discover_petri_net_inductive(event_log)
+```
+
+**In a Marimo notebook:**
+
+Marimo support requires a one-time setup step. The middleware patches Marimo's AST compiler at Python startup via `sitecustomize.py`, which must be placed in your virtual environment (already in place if installed via `uv`).
+
+**Structural requirement:** Marimo's reactive DAG is built from the original cell code *before* the AST rewriter runs. This means the rewriter cannot inject dependency edges automatically. To guarantee that `init_marimo()` runs before any tracked cell, **combine your path setup and `init_marimo()` call in one cell** and export all imports (`pd`, constants, etc.) from it. Downstream cells then depend on those names naturally, which implicitly orders them after init — no need to add `rt` to every cell's parameters.
+
+```python
+# ── Setup + init (one cell) ───────────────────────────────────────────────────
+@app.cell
+def _():
+    import sys, pandas as pd
+    from pathlib import Path
+    from tracker import init_marimo, operation_type
+
+    # ... path setup ...
+
+    rt = init_marimo(history_name="My analysis")
+    operation_type("data_loading", pd.read_csv)
+
+    def settle():
+        rt.storage._executor.submit(lambda: None).result()
+
+    return pd, rt, settle, DATA_FILE  # export everything downstream cells need
+
+
+# ── Analysis cells — no `rt` needed in params ─────────────────────────────────
+@app.cell
+def _(DATA_FILE, pd):          # depends on pd + DATA_FILE → init already ran
+    event_log = pd.read_csv(DATA_FILE, parse_dates=["time:timestamp"])
+    return (event_log,)
+```
+
+Run with:
+```bash
+uv run marimo run examples/marimo/provenance_demo.py
+# or for interactive editing:
+uv run marimo edit examples/marimo/provenance_demo.py
+```
+
+> **Note:** Provenance capture works in Marimo. Some introspection features (interactive widget, manual checkout) are not yet validated in the Marimo environment.
+
+**Inspect the provenance graph:**
+
+```python
+rt.list_states()           # table of all recorded steps
+rt.show_graph()            # static matplotlib tree
+rt.show_graph_widget()     # interactive Jupyter widget (Jupyter only)
+```
+
+**Branch from a past state:**
+
+```python
+branch = rt.checkout("paste-state-id-here", branch_name="experiment-v2")
+```
+
+See [`examples/jupyter/provenance_demo.ipynb`](examples/jupyter/provenance_demo.ipynb) for a full Jupyter walkthrough and [`examples/marimo/provenance_demo.py`](examples/marimo/provenance_demo.py) for the Marimo equivalent, both using the RTFM dataset.
+
+---
+
+## Optional extras
+
+| Extra | What it adds |
+|---|---|
+| `duckdb` | DuckDB storage backend (preferred) |
+| `parquet` | DataFrame artifact persistence via pyarrow |
+| `graph` | `show_graph()` via networkx + matplotlib |
+| `widgets` | `show_graph_widget()` interactive panel |
+| `marimo` | Marimo notebook support |
+| `full` | Everything above |
+
+```bash
+uv pip install -e ".[full]"
+```
+
+---
+
+## Project structure
+
+```
+models/    Pydantic v2 domain models (provenance entities)
+tracker/   Runtime middleware (AST rewriter, tracer, storage)
+examples/  Demo notebook + RTFM dataset helpers
+```
+
+---
+
+## Running tests
+
+```bash
+uv sync --all-extras --dev
+uv run pytest
+```
+
+## Git hooks (optional)
+
+Enforces the test suite and conventional commit format (≤ 45 chars) on every commit:
+
+```bash
+uv run pre-commit install && uv run pre-commit install --hook-type commit-msg
+```
+
+Skip this step if you prefer to run checks manually.
+
+---
+
+## Contributing
+
+See [CONTRIBUTING.md](CONTRIBUTING.md).
+
+## License
+
+Apache 2.0 — see [LICENSE](LICENSE).

pmprov-0.1.0/models/__init__.py

@@ -0,0 +1,78 @@
+"""
+Pydantic data model for Analytic Provenance in Exploratory Process Mining.
+
+Derived from: "A Conceptual Model to Enhance Process Mining Analysis with Provenance"
+(ER 2026, blinded for review)
+
+Package layout
+--------------
+agents      – Agent, AgentType, RuntimeEnvironment
+artifacts   – Artifact, ArtifactType, ArtifactState, Delta, DataFrameDelta, ModificationType
+parameters  – Parameter, ParameterValueType, and all ParameterValue subclasses / union
+operations  – OperationType, StepCategory, Operation, Version
+analysis    – AnalysisStep, AnalysisState, StateAbstraction
+history     – AnalysisBranch, AnalysisHistory
+pipelines   – PipelineFragment, Pipeline
+"""
+
+from .agents import Agent, AgentType, RuntimeEnvironment
+from .analysis import AnalysisState, AnalysisStep, StateAbstraction
+from .artifacts import (
+    Artifact,
+    ArtifactState,
+    ArtifactType,
+    DataFrameDelta,
+    Delta,
+    ModificationType,
+)
+from .history import AnalysisBranch, AnalysisHistory
+from .operations import Operation, OperationType, StepCategory, Version
+from .parameters import (
+    ArtifactStateParameterValue,
+    DictParameterValue,
+    LambdaParameterValue,
+    ListParameterValue,
+    Parameter,
+    ParameterValue,
+    ParameterValueType,
+    ScalarParameterValue,
+)
+from .pipelines import Pipeline, PipelineFragment
+
+__all__ = [
+    # agents
+    "AgentType",
+    "Agent",
+    "RuntimeEnvironment",
+    # artifacts
+    "ArtifactType",
+    "ModificationType",
+    "Artifact",
+    "ArtifactState",
+    "Delta",
+    "DataFrameDelta",
+    # parameters
+    "ParameterValueType",
+    "Parameter",
+    "ScalarParameterValue",
+    "ArtifactStateParameterValue",
+    "LambdaParameterValue",
+    "ListParameterValue",
+    "DictParameterValue",
+    "ParameterValue",
+    # operations
+    "OperationType",
+    "StepCategory",
+    "Operation",
+    "Version",
+    # analysis
+    "StateAbstraction",
+    "AnalysisState",
+    "AnalysisStep",
+    # history
+    "AnalysisBranch",
+    "AnalysisHistory",
+    # pipelines
+    "PipelineFragment",
+    "Pipeline",
+]

pmprov-0.1.0/models/agents.py

@@ -0,0 +1,59 @@
+"""Agent and execution-environment models."""
+
+from __future__ import annotations
+
+from enum import Enum
+from typing import Optional
+
+from pydantic import BaseModel, Field
+
+
+class AgentType(str, Enum):
+    """Distinguishes human analysts from automated scripts / systems."""
+
+    HUMAN = "human"
+    AUTOMATED = "automated"
+
+
+class Agent(BaseModel):
+    """
+    Represents the entity (human or system) that performs an AnalysisStep.
+
+    UML attributes: agentId, agentType
+    """
+
+    agent_id: str = Field(..., description="Unique identifier for the agent.")
+    agent_type: AgentType = Field(
+        ..., description="Whether the agent is a human analyst or an automated system."
+    )
+    username: Optional[str] = Field(
+        None, description="OS username of the agent, captured at session start."
+    )
+
+
+class RuntimeEnvironment(BaseModel):
+    """
+    Captures the execution environment of an AnalysisStep to enable reproducibility (R2).
+
+    UML attributes: envId, toolVersion, libraryVersions, runtime
+    """
+
+    env_id: str = Field(..., description="Unique identifier for this environment snapshot.")
+    tool_version: str = Field(
+        ..., description="Version of the primary analysis tool (e.g., Python 3.11)."
+    )
+    library_versions: dict[str, str] = Field(
+        default_factory=dict,
+        description="Map of library name → version string (e.g., {'pandas': '2.2.1'}).",
+    )
+    runtime: Optional[str] = Field(
+        None,
+        description="Free-form description of the runtime platform (OS, hardware, etc.).",
+    )
+
+
+__all__ = [
+    "AgentType",
+    "Agent",
+    "RuntimeEnvironment",
+]